Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC131902.3-201ENST00000611767 581 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.09□□□□□ -1.59
MSX2P35548 AC027807.2-201ENST00000616099 408 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AL158209.2-201ENST00000619266 216 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AC079228.1-201ENST00000624774 1049 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AP003400.3-201ENST00000624904 346 ntBASIC5.09□□□□□ -1.59
MSX2P35548 LRRC77P-213ENST00000637727 880 ntBASIC5.09□□□□□ -1.59
MSX2P35548 AC073869.10-201ENST00000642016 354 ntBASIC5.09□□□□□ -1.59
MSX2P35548 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
MSX2P35548 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX2P35548 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
MSX2P35548 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
MSX2P35548 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
MSX2P35548 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
MSX2P35548 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 SRRM1P3-201ENST00000426911 2678 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 RNA5SP273-201ENST00000362484 113 ntBASIC5.08□□□□□ -1.6
MSX2P35548 RNU1-19P-201ENST00000363306 165 ntBASIC5.08□□□□□ -1.6
MSX2P35548 RNU6-1066P-201ENST00000363573 105 ntBASIC5.08□□□□□ -1.6
MSX2P35548 RNU5E-5P-201ENST00000365379 116 ntBASIC5.08□□□□□ -1.6
MSX2P35548 SUGT1P1-201ENST00000379514 476 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AL589647.1-201ENST00000402485 466 ntBASIC5.08□□□□□ -1.6
MSX2P35548 RN7SKP240-201ENST00000410583 375 ntBASIC5.08□□□□□ -1.6
MSX2P35548 NPM1P40-201ENST00000412758 733 ntBASIC5.08□□□□□ -1.6
MSX2P35548 MTCO3P1-205ENST00000422088 832 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.08□□□□□ -1.6
MSX2P35548 AC007679.3-201ENST00000434035 414 ntBASIC5.08□□□□□ -1.6
MSX2P35548 USP9YP8-201ENST00000441913 500 ntBASIC5.08□□□□□ -1.6
MSX2P35548 OR7E125P-201ENST00000443450 846 ntBASIC5.08□□□□□ -1.6
MSX2P35548 HMGN1P2-201ENST00000445197 310 ntBASIC5.08□□□□□ -1.6
MSX2P35548 NOP56P2-201ENST00000447491 769 ntBASIC5.08□□□□□ -1.6
MSX2P35548 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX2P35548 AC008628.2-201ENST00000502605 298 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC098799.3-201ENST00000506095 438 ntBASIC5.08□□□□□ -1.6
MSX2P35548 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 AC011411.1-201ENST00000509592 876 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX2P35548 PTGES3P3-201ENST00000511479 482 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC010342.1-201ENST00000514047 877 ntBASIC5.08□□□□□ -1.6
MSX2P35548 RNA5SP438-201ENST00000516561 112 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX2P35548 AC239860.2-201ENST00000525886 270 ntBASIC5.08□□□□□ -1.6
MSX2P35548 OR4A45P-201ENST00000529954 901 ntBASIC5.08□□□□□ -1.6
MSX2P35548 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.08□□□□□ -1.6
MSX2P35548 AC006512.2-201ENST00000543250 486 ntBASIC5.08□□□□□ -1.6
MSX2P35548 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 AC004217.3-201ENST00000551552 878 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX2P35548 AC007956.1-201ENST00000555623 542 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC127381.1-201ENST00000555979 939 ntBASIC5.08□□□□□ -1.6
MSX2P35548 TRAV15-201ENST00000556680 249 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 MIR4472-2-201ENST00000582069 67 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC5.08□□□□□ -1.6
MSX2P35548 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX2P35548 AL365503.1-201ENST00000605247 905 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AL390208.1-201ENST00000605885 644 ntBASIC5.08□□□□□ -1.6
MSX2P35548 AC002553.4-201ENST00000616896 331 ntBASIC5.08□□□□□ -1.6
MSX2P35548 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
MSX2P35548 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX2P35548 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSX2P35548 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.08□□□□□ -1.6
MSX2P35548 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX2P35548 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 CDR1-202ENST00000625883 1485 ntBASIC5.07□□□□□ -1.6
MSX2P35548 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.07□□□□□ -1.6
MSX2P35548 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 AC009313.2-201ENST00000417893 1941 ntBASIC5.07□□□□□ -1.6
MSX2P35548 CYP1D1P-201ENST00000416662 1433 ntBASIC5.07□□□□□ -1.6
MSX2P35548 ZNF37BP-203ENST00000452306 1352 ntBASIC5.07□□□□□ -1.6
MSX2P35548 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX2P35548 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 IGKV7-3-201ENST00000357453 298 ntBASIC5.07□□□□□ -1.6
MSX2P35548 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX2P35548 Y_RNA.38-201ENST00000362617 102 ntBASIC5.07□□□□□ -1.6
MSX2P35548 Y_RNA.372-201ENST00000365599 102 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms