Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.11□□□□□ -1.75
COL4A1P02462 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.11□□□□□ -1.75
COL4A1P02462 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.11□□□□□ -1.75
COL4A1P02462 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A1P02462 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A1P02462 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
COL4A1P02462 AC073657.2-201ENST00000605661 303 ntBASIC4.11□□□□□ -1.75
COL4A1P02462 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.11□□□□□ -1.75
COL4A1P02462 AC135507.2-201ENST00000612443 309 ntBASIC4.11□□□□□ -1.75
COL4A1P02462 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.11□□□□□ -1.75
COL4A1P02462 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL4A1P02462 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
COL4A1P02462 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL4A1P02462 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A1P02462 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A1P02462 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A1P02462 NMD3P1-201ENST00000439704 1488 ntBASIC4.11□□□□□ -1.75
COL4A1P02462 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A1P02462 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A1P02462 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A1P02462 AC025750.2-201ENST00000442609 450 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 AC096576.1-201ENST00000489014 359 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 AC020893.1-201ENST00000502452 580 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 OR4R3P-201ENST00000525084 838 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A1P02462 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A1P02462 AC074276.2-201ENST00000619891 348 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 CR381670.1-201ENST00000624291 1693 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A1P02462 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
COL4A1P02462 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A1P02462 TNPO1P3-201ENST00000436471 2662 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A1P02462 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A1P02462 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A1P02462 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A1P02462 SNORA44-201ENST00000384584 132 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 AC093719.1-202ENST00000392735 373 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 UBA52P6-201ENST00000399822 382 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A1P02462 RPL23AP71-201ENST00000470966 469 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 RPL32P34-201ENST00000486380 400 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 AC024224.1-201ENST00000538284 609 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A1P02462 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A1P02462 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A1P02462 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A1P02462 AC099489.2-201ENST00000574976 260 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 AC006539.2-201ENST00000601729 572 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 AC006386.2-201ENST00000624491 75 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 AC012005.1-201ENST00000624575 75 ntBASIC4.1□□□□□ -1.75
COL4A1P02462 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A1P02462 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A1P02462 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.09□□□□□ -1.75
COL4A1P02462 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.09□□□□□ -1.75
COL4A1P02462 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A1P02462 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A1P02462 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
COL4A1P02462 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.09□□□□□ -1.75
COL4A1P02462 Z83843.1-201ENST00000604070 3685 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 RNA5SP104-201ENST00000410989 118 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 YWHAEP5-201ENST00000431545 765 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 AP001992.1-205ENST00000462248 379 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 RN7SL93P-201ENST00000463035 293 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 AC037198.2-201ENST00000478845 733 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 SCARNA20.6-201ENST00000517251 106 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.09□□□□□ -1.76
COL4A1P02462 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A1P02462 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.09□□□□□ -1.76
COL4A1P02462 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.09□□□□□ -1.76
COL4A1P02462 MIR2682-201ENST00000580305 110 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 MIR3124-201ENST00000582636 67 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 MIR6852-201ENST00000621699 66 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 LINC02471-203ENST00000641941 4752 ntBASIC4.09□□□□□ -1.76
COL4A1P02462 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.09□□□□□ -1.76
COL4A1P02462 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.76
COL4A1P02462 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL4A1P02462 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A1P02462 AC119744.1-201ENST00000454746 1715 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A1P02462 AL513302.2-201ENST00000562313 1842 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A1P02462 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A1P02462 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A1P02462 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
COL4A1P02462 Y_RNA.510-201ENST00000384511 114 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A1P02462 AC236972.1-201ENST00000433225 199 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A1P02462 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 RN7SL863P-201ENST00000462370 296 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 TMED11P-201ENST00000479478 690 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A1P02462 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A1P02462 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.08□□□□□ -1.76
COL4A1P02462 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A1P02462 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A1P02462 AC010680.3-201ENST00000604215 520 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 AL162713.1-201ENST00000604480 262 ntBASIC4.08□□□□□ -1.76
COL4A1P02462 HSPA8P17-201ENST00000427029 1382 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms