Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 IGLV3-26-201ENST00000520756 302 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC012603.1-201ENST00000606424 528 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 NCOA4P2-201ENST00000340589 1813 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 RNU1-15P-201ENST00000353977 144 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 RSL24D1P1-201ENST00000404972 493 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 RPL31P50-201ENST00000471002 296 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC132942.1-201ENST00000486753 483 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AC067852.4-201ENST00000590314 478 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AL035407.1-201ENST00000429211 571 ntBASIC3.31□□□□□ -1.88
VPS13AQ96RL7 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 HMGN2P7-201ENST00000456186 273 ntBASIC3.31□□□□□ -1.88
VPS13AQ96RL7 RN7SKP46-201ENST00000515942 234 ntBASIC3.31□□□□□ -1.88
VPS13AQ96RL7 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AC128687.2-201ENST00000609657 566 ntBASIC3.31□□□□□ -1.88
VPS13AQ96RL7 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 RPS3AP43-201ENST00000479743 781 ntBASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.31□□□□□ -1.88
VPS13AQ96RL7 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AC068647.1-201ENST00000489539 2265 ntBASIC3.31□□□□□ -1.88
VPS13AQ96RL7 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS13AQ96RL7 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 GEMIN8P3-201ENST00000445417 720 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 MIR2682-201ENST00000580305 110 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AC009159.1-201ENST00000618386 642 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 NEAT1-202ENST00000501122 22743 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AL139132.1-201ENST00000431587 344 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AC069285.2-201ENST00000440210 275 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AL031584.1-201ENST00000447169 754 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AC021678.1-201ENST00000505195 936 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 MIR3936-201ENST00000584304 110 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AC009313.2-201ENST00000417893 1941 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 SNORA67.4-201ENST00000384688 142 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 KCTD9P3-201ENST00000434597 1169 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AP001207.2-201ENST00000519490 539 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 AC005242.1-201ENST00000585658 438 ntBASIC3.3□□□□□ -1.88
VPS13AQ96RL7 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS13AQ96RL7 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms