Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNU6-532P-201ENST00000384318 107 ntBASIC6.4□□□□□ -1.38
LIG1P18858 Y_RNA.509-201ENST00000384506 99 ntBASIC6.4□□□□□ -1.38
LIG1P18858 RPL23AP29-201ENST00000397284 453 ntBASIC6.4□□□□□ -1.38
LIG1P18858 TMSB4XP8-201ENST00000402089 135 ntBASIC6.4□□□□□ -1.38
LIG1P18858 TMSB4XP6-201ENST00000415187 135 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AC114814.2-201ENST00000419195 485 ntBASIC6.4□□□□□ -1.38
LIG1P18858 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 RPS27AP14-201ENST00000422868 454 ntBASIC6.4□□□□□ -1.38
LIG1P18858 TMSB4XP1-201ENST00000424567 135 ntBASIC6.4□□□□□ -1.38
LIG1P18858 RPL23AP4-201ENST00000427757 463 ntBASIC6.4□□□□□ -1.38
LIG1P18858 MTND6P12-201ENST00000428247 522 ntBASIC6.4□□□□□ -1.38
LIG1P18858 VDAC1P6-201ENST00000430062 855 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.4□□□□□ -1.38
LIG1P18858 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.4□□□□□ -1.38
LIG1P18858 AC243772.1-201ENST00000451620 410 ntBASIC6.4□□□□□ -1.38
LIG1P18858 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG1P18858 AC009120.1-201ENST00000493458 473 ntBASIC6.4□□□□□ -1.38
LIG1P18858 NENFP3-201ENST00000503735 313 ntBASIC6.4□□□□□ -1.38
LIG1P18858 ARL4AP2-201ENST00000507378 601 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG1P18858 IMPA1P1-201ENST00000510718 842 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC6.4□□□□□ -1.38
LIG1P18858 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 MTCO1P35-201ENST00000515270 228 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 AP005639.2-201ENST00000527592 928 ntBASIC6.4□□□□□ -1.38
LIG1P18858 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 BNIP3P8-201ENST00000597863 560 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG1P18858 MEMO1P5-201ENST00000604810 406 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AC008277.2-201ENST00000605196 797 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AC055764.2-201ENST00000610089 670 ntBASIC6.4□□□□□ -1.38
LIG1P18858 AL359535.1-201ENST00000612100 1087 ntBASIC6.4□□□□□ -1.38
LIG1P18858 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIG1P18858 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
LIG1P18858 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
LIG1P18858 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
LIG1P18858 AL031985.3-201ENST00000565390 2449 ntBASIC6.4□□□□□ -1.39
LIG1P18858 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.4□□□□□ -1.39
LIG1P18858 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
LIG1P18858 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
LIG1P18858 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
LIG1P18858 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC6.4□□□□□ -1.39
LIG1P18858 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
LIG1P18858 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC6.4□□□□□ -1.39
LIG1P18858 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
LIG1P18858 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
LIG1P18858 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG1P18858 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
LIG1P18858 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG1P18858 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
LIG1P18858 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
LIG1P18858 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.39□□□□□ -1.39
LIG1P18858 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
LIG1P18858 MIR375-201ENST00000362103 64 ntBASIC6.39□□□□□ -1.39
LIG1P18858 RN7SKP69-201ENST00000365390 305 ntBASIC6.39□□□□□ -1.39
LIG1P18858 SUGT1P1-201ENST00000379514 476 ntBASIC6.39□□□□□ -1.39
LIG1P18858 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG1P18858 CALM2P3-201ENST00000400429 449 ntBASIC6.39□□□□□ -1.39
LIG1P18858 HMGB1P20-201ENST00000402555 677 ntBASIC6.39□□□□□ -1.39
LIG1P18858 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG1P18858 RNU2-65P-201ENST00000410162 185 ntBASIC6.39□□□□□ -1.39
LIG1P18858 Y_RNA.598-201ENST00000410480 95 ntBASIC6.39□□□□□ -1.39
LIG1P18858 RPL21P111-201ENST00000418453 477 ntBASIC6.39□□□□□ -1.39
LIG1P18858 USP9YP20-201ENST00000419224 558 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG1P18858 AC127526.2-201ENST00000426436 775 ntBASIC6.39□□□□□ -1.39
LIG1P18858 HMGN2P27-201ENST00000427352 270 ntBASIC6.39□□□□□ -1.39
LIG1P18858 NPM1P24-201ENST00000428039 894 ntBASIC6.39□□□□□ -1.39
LIG1P18858 ZYG11AP1-201ENST00000430329 837 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AL513175.1-201ENST00000431492 780 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AL161636.2-201ENST00000445179 927 ntBASIC6.39□□□□□ -1.39
LIG1P18858 RPL31P44-201ENST00000447680 377 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AL445665.1-202ENST00000452436 324 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AZGP1P2-201ENST00000454506 345 ntBASIC6.39□□□□□ -1.39
LIG1P18858 OFD1P4Y-201ENST00000455273 1179 ntBASIC6.39□□□□□ -1.39
LIG1P18858 TRBV8-2-201ENST00000475637 270 ntBASIC6.39□□□□□ -1.39
LIG1P18858 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG1P18858 RPL5P22-201ENST00000480199 884 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC6.39□□□□□ -1.39
LIG1P18858 AC009646.1-201ENST00000510455 318 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AC074255.1-201ENST00000511259 501 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AC024589.1-201ENST00000512207 263 ntBASIC6.39□□□□□ -1.39
LIG1P18858 RFPL4AP5-201ENST00000514977 504 ntBASIC6.39□□□□□ -1.39
LIG1P18858 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.39□□□□□ -1.39
LIG1P18858 SCARNA15.1-201ENST00000516384 125 ntBASIC6.39□□□□□ -1.39
LIG1P18858 SCARNA6.1-201ENST00000516989 238 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC6.39□□□□□ -1.39
LIG1P18858 OR5M7P-201ENST00000526140 972 ntBASIC6.39□□□□□ -1.39
LIG1P18858 RGS5-218ENST00000526176 574 ntTSL 4 BASIC6.39□□□□□ -1.39
LIG1P18858 AP001893.2-201ENST00000526949 202 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AP000648.1-201ENST00000529682 397 ntBASIC6.39□□□□□ -1.39
LIG1P18858 HMGB1P42-201ENST00000532126 553 ntBASIC6.39□□□□□ -1.39
LIG1P18858 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG1P18858 AC027544.3-201ENST00000535082 757 ntBASIC6.39□□□□□ -1.39
LIG1P18858 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 138.4 ms