Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.09□□□□□ -1.76
ZNF540Q8NDQ6 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
ZNF540Q8NDQ6 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
ZNF540Q8NDQ6 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
ZNF540Q8NDQ6 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 ENSAP3-201ENST00000312710 333 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 RNU6-1339P-201ENST00000363574 91 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 SNORA51.2-201ENST00000364595 132 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 SNORA62-201ENST00000365493 153 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 Z98745.1-201ENST00000402553 494 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 RPL23AP26-201ENST00000412728 464 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 COX6CP17-201ENST00000421389 185 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 PNRC2P1-201ENST00000423940 420 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC093422.3-201ENST00000428506 305 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 CNOT7P1-201ENST00000429006 852 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 HMGB1P45-201ENST00000435986 653 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC005154.2-201ENST00000438110 379 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 ELOCP3-201ENST00000439303 348 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AL162151.2-201ENST00000448875 158 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC104306.1-201ENST00000449702 371 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 RPL23AP15-201ENST00000450202 459 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC008280.2-201ENST00000455473 307 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 snoU13.1-201ENST00000459157 104 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC007688.1-201ENST00000475592 759 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 NPM1P17-201ENST00000479221 602 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC073522.1-201ENST00000483312 377 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 NCOR1P1-202ENST00000486162 291 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC146944.2-203ENST00000502493 354 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC104108.1-201ENST00000509930 412 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC139495.1-202ENST00000513164 354 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 HIGD1AP3-201ENST00000515857 278 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 MIR4644-201ENST00000579929 84 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AL160290.3-201ENST00000604869 165 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC107081.3-201ENST00000612715 2034 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 MIR1264-201ENST00000616374 69 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AL356490.1-201ENST00000623079 479 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 AC092608.3-201ENST00000625017 386 ntBASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF540Q8NDQ6 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC097504.1-201ENST00000515103 2415 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC116096.1-201ENST00000566804 2314 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 RNA5SP388-201ENST00000362584 119 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AL353692.2-201ENST00000407054 335 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 HMGB3P31-201ENST00000413333 595 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 JKAMPP1-201ENST00000413804 919 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 P2RY10P2-201ENST00000416730 913 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 ARL2BPP3-201ENST00000421226 480 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC092017.2-201ENST00000427600 362 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 RPS27AP12-201ENST00000429552 465 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC005189.1-201ENST00000431286 310 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms