RNA–Protein interactions for RNA: ENST00000358025.7

SYNE2-204, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SYNE2, Length 21,842 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-204ENST00000358025 MYT1Q01538 1121 aa6.94□□□□□ -1.3
SYNE2-204ENST00000358025 NISCHQ9Y2I1 1504 aa6.94□□□□□ -1.3
SYNE2-204ENST00000358025 PELP1Q8IZL8 1130 aaKnown RBP6.93□□□□□ -1.3
SYNE2-204ENST00000358025 ZEB1P37275 1124 aaPredicted RBP6.66□□□□□ -1.34
SYNE2-204ENST00000358025 TTBK1Q5TCY1 1321 aaPredicted RBP6.48□□□□□ -1.37
SYNE2-204ENST00000358025 DCAF8L2P0C7V8 631 aa6.46□□□□□ -1.37
SYNE2-204ENST00000358025 HRCP23327 699 aa6.44□□□□□ -1.38
SYNE2-204ENST00000358025 CENPBP07199 599 aaPredicted RBP6.39□□□□□ -1.39
SYNE2-204ENST00000358025 TRIM26Q12899 539 aaPredicted RBP6.33□□□□□ -1.4
SYNE2-204ENST00000358025 EHMT2Q96KQ7 1210 aa6.3□□□□□ -1.4
SYNE2-204ENST00000358025 SUPT5HO00267 1087 aaKnown RBP6.28□□□□□ -1.4
SYNE2-204ENST00000358025 CLSPNQ9HAW4 1339 aa6.27□□□□□ -1.41
SYNE2-204ENST00000358025 PCGF6Q9BYE7 350 aa6.25□□□□□ -1.41
SYNE2-204ENST00000358025 CCER1Q8TC90 406 aaPredicted RBP6.23□□□□□ -1.41
SYNE2-204ENST00000358025 MYT1LQ9UL68 1186 aa6.13□□□□□ -1.43
SYNE2-204ENST00000358025 CHIC1Q5VXU3 224 aa6.12□□□□□ -1.43
SYNE2-204ENST00000358025 DCAF1Q9Y4B6 1507 aa6.11□□□□□ -1.43
SYNE2-204ENST00000358025 APLP2Q06481 763 aa6.1□□□□□ -1.43
SYNE2-204ENST00000358025 YTHDC1Q96MU7 727 aaKnown RBP6.09□□□□□ -1.43
SYNE2-204ENST00000358025 TRIM41Q8WV44 630 aa6.05□□□□□ -1.44
SYNE2-204ENST00000358025 SHROOM4Q9ULL8 1493 aa6.02□□□□□ -1.45
SYNE2-204ENST00000358025 NEFLP07196 543 aa6.01□□□□□ -1.45
SYNE2-204ENST00000358025 DIEXFQ68CQ4 756 aaKnown RBP5.99□□□□□ -1.45
SYNE2-204ENST00000358025 FAM9AQ8IZU1 332 aaPredicted RBP5.97□□□□□ -1.45
SYNE2-204ENST00000358025 ACIN1Q9UKV3 1341 aaKnown RBP5.96□□□□□ -1.46
SYNE2-204ENST00000358025 ERICH6Q7L0X2 663 aa5.95□□□□□ -1.46
SYNE2-204ENST00000358025 ZNF316A6NFI3 1004 aaPredicted RBP5.9□□□□□ -1.46
SYNE2-204ENST00000358025 RANGAP1P46060 587 aaPredicted RBP5.87□□□□□ -1.47
SYNE2-204ENST00000358025 LOC105371045A0A1W2PR82 267 aa5.86□□□□□ -1.47
SYNE2-204ENST00000358025 GTF3C3Q9Y5Q9 886 aa5.86□□□□□ -1.47
SYNE2-204ENST00000358025 ERICH6BQ5W0A0 696 aa5.83□□□□□ -1.48
SYNE2-204ENST00000358025 UBTFP17480 764 aaKnown RBP5.83□□□□□ -1.48
SYNE2-204ENST00000358025 TIMELESSQ9UNS1 1208 aa5.81□□□□□ -1.48
SYNE2-204ENST00000358025 CCDC180Q9P1Z9 1646 aa5.81□□□□□ -1.48
SYNE2-204ENST00000358025 ZCCHC6Q5VYS8 1495 aaKnown RBP5.8□□□□□ -1.48
SYNE2-204ENST00000358025 PPARGC1BQ86YN6 1023 aaKnown RBP5.8□□□□□ -1.48
SYNE2-204ENST00000358025 EEA1Q15075 1411 aa5.8□□□□□ -1.48
SYNE2-204ENST00000358025 CDK11AQ9UQ88 783 aaPredicted RBP5.79□□□□□ -1.48
SYNE2-204ENST00000358025 DAXXQ9UER7 740 aaPredicted RBP5.76□□□□□ -1.49
SYNE2-204ENST00000358025 SCAF1Q9H7N4 1312 aaKnown RBP5.76□□□□□ -1.49
SYNE2-204ENST00000358025 RTL5Q5HYW3 569 aaPredicted RBP5.75□□□□□ -1.49
SYNE2-204ENST00000358025 ATP1B4Q9UN42 357 aaPredicted RBP5.74□□□□□ -1.49
SYNE2-204ENST00000358025 ANP32EQ9BTT0 268 aa5.73□□□□□ -1.49
SYNE2-204ENST00000358025 ANP32CO43423 234 aa5.73□□□□□ -1.49
SYNE2-204ENST00000358025 CSRNP3Q8WYN3 585 aa5.71□□□□□ -1.5
SYNE2-204ENST00000358025 CNGB1Q14028 1251 aaPredicted RBP5.71□□□□□ -1.5
SYNE2-204ENST00000358025 NEUROD1Q13562 356 aa5.7□□□□□ -1.5
SYNE2-204ENST00000358025 GLIPR1L2Q4G1C9 344 aa5.7□□□□□ -1.5
SYNE2-204ENST00000358025 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.69□□□□□ -1.5
SYNE2-204ENST00000358025 MYO15BQ96JP2 1530 aa5.69□□□□□ -1.5
SYNE2-204ENST00000358025 ANP32AP39687 249 aaKnown RBP5.68□□□□□ -1.5
SYNE2-204ENST00000358025 TNIKQ9UKE5 1360 aa5.67□□□□□ -1.5
SYNE2-204ENST00000358025 EIF5BO60841 1220 aaKnown RBP5.65□□□□□ -1.5
SYNE2-204ENST00000358025 ARID4BQ4LE39 1312 aaPredicted RBP5.64□□□□□ -1.51
SYNE2-204ENST00000358025 WRNQ14191 1432 aaPredicted RBP eCLIP5.63□□□□□ -1.51
SYNE2-204ENST00000358025 CCER2I3L3R5 266 aa5.63□□□□□ -1.51
SYNE2-204ENST00000358025 USP35Q9P2H5 1018 aa5.63□□□□□ -1.51
SYNE2-204ENST00000358025 SLC24A1O60721 1099 aa5.61□□□□□ -1.51
SYNE2-204ENST00000358025 RSF1Q96T23 1441 aaPredicted RBP5.6□□□□□ -1.51
SYNE2-204ENST00000358025 MIER1Q8N108 512 aa5.6□□□□□ -1.51
SYNE2-204ENST00000358025 DDRGK1Q96HY6 314 aa5.59□□□□□ -1.51
SYNE2-204ENST00000358025 HNRNPUL2Q1KMD3 747 aaKnown RBP5.59□□□□□ -1.51
SYNE2-204ENST00000358025 RB1CC1Q8TDY2 1594 aa5.58□□□□□ -1.52
SYNE2-204ENST00000358025 FANCIQ9NVI1 1328 aa5.57□□□□□ -1.52
SYNE2-204ENST00000358025 PPP4R2Q9NY27 417 aa5.57□□□□□ -1.52
SYNE2-204ENST00000358025 ZBTB47Q9UFB7 747 aaPredicted RBP5.57□□□□□ -1.52
SYNE2-204ENST00000358025 PPM1GO15355 546 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-204ENST00000358025 POLR3GLQ9BT43 218 aa5.55□□□□□ -1.52
SYNE2-204ENST00000358025 FKBP8Q14318 412 aa5.55□□□□□ -1.52
SYNE2-204ENST00000358025 NCLP19338 710 aaKnown RBP5.53□□□□□ -1.52
SYNE2-204ENST00000358025 SUPT16HQ9Y5B9 1047 aaKnown RBP5.53□□□□□ -1.52
SYNE2-204ENST00000358025 ANP32BQ92688 251 aaKnown RBP5.53□□□□□ -1.52
SYNE2-204ENST00000358025 GOLGA3Q08378 1498 aa5.53□□□□□ -1.52
SYNE2-204ENST00000358025 BCL11AQ9H165 835 aa5.53□□□□□ -1.52
SYNE2-204ENST00000358025 NACADO15069 1562 aa5.52□□□□□ -1.53
SYNE2-204ENST00000358025 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.51□□□□□ -1.53
SYNE2-204ENST00000358025 CEP164Q9UPV0 1460 aa5.51□□□□□ -1.53
SYNE2-204ENST00000358025 CLIP1P30622 1438 aa5.5□□□□□ -1.53
SYNE2-204ENST00000358025 CCDC136Q96JN2 1154 aa5.5□□□□□ -1.53
SYNE2-204ENST00000358025 UPF2Q9HAU5 1272 aaKnown RBP5.5□□□□□ -1.53
SYNE2-204ENST00000358025 CEP162Q5TB80 1403 aa5.49□□□□□ -1.53
SYNE2-204ENST00000358025 BECN1Q14457 450 aa5.49□□□□□ -1.53
SYNE2-204ENST00000358025 NGEFQ8N5V2 710 aa5.48□□□□□ -1.53
SYNE2-204ENST00000358025 RBM19Q9Y4C8 960 aaKnown RBP5.48□□□□□ -1.53
SYNE2-204ENST00000358025 TCERG1O14776 1098 aaKnown RBP5.48□□□□□ -1.53
SYNE2-204ENST00000358025 NOP58Q9Y2X3 529 aaKnown RBP5.47□□□□□ -1.53
SYNE2-204ENST00000358025 EIF4G2P78344 907 aaKnown RBP eCLIP5.47□□□□□ -1.53
SYNE2-204ENST00000358025 TMC1Q8TDI8 760 aa5.47□□□□□ -1.53
SYNE2-204ENST00000358025 CFAP44Q96MT7 982 aa5.47□□□□□ -1.53
SYNE2-204ENST00000358025 DDX10Q13206 875 aaKnown RBP5.47□□□□□ -1.53
SYNE2-204ENST00000358025 MS4A1P11836 297 aa5.46□□□□□ -1.53
SYNE2-204ENST00000358025 PDE3BQ13370 1112 aa5.46□□□□□ -1.54
SYNE2-204ENST00000358025 PTMSP20962 102 aa5.46□□□□□ -1.54
SYNE2-204ENST00000358025 RSPH6AQ9H0K4 717 aa5.46□□□□□ -1.54
SYNE2-204ENST00000358025 HNRNPUQ00839 825 aaKnown RBP eCLIP5.46□□□□□ -1.54
SYNE2-204ENST00000358025 TSHZ2Q9NRE2 1034 aa5.46□□□□□ -1.54
SYNE2-204ENST00000358025 ITGAEP38570 1179 aa5.45□□□□□ -1.54
SYNE2-204ENST00000358025 FHAD1B1AJZ9 1412 aa5.45□□□□□ -1.54
SYNE2-204ENST00000358025 SLC4A1APQ9BWU0 796 aaKnown RBP5.45□□□□□ -1.54
SYNE2-204ENST00000358025 TONSLQ96HA7 1378 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms