Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC092266.1-201ENST00000610958 165 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 U1.25-201ENST00000614085 162 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 MTND5P42-201ENST00000637720 498 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 Y_RNA.419-201ENST00000384041 102 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 RNU6-74P-201ENST00000384235 107 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 MYL6P5-201ENST00000412707 459 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AL133384.1-201ENST00000412744 351 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 DNAJC19P5-201ENST00000443295 316 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AL445466.1-201ENST00000448432 357 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 SBDSP1-204ENST00000453858 737 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 RPL38P4-201ENST00000502376 214 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 PCBP2P3-201ENST00000509726 843 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 EIF3KP3-201ENST00000514461 639 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 RNU7-30P-201ENST00000516835 62 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC024405.1-201ENST00000532521 1042 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC006512.2-201ENST00000543250 486 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 NPM1P42-201ENST00000560329 862 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 MIR4420-201ENST00000583944 77 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC010591.1-201ENST00000603941 649 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AP001437.1-201ENST00000608783 456 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 OR10AB1P-201ENST00000609613 938 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 MIR6809-201ENST00000612189 116 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AL603758.1-201ENST00000618654 241 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AC069234.4-201ENST00000621276 412 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 RMST_7.1-201ENST00000621935 268 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AL136228.1-201ENST00000622221 319 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 AP000432.2-201ENST00000624164 2048 ntBASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
UBE3DQ7Z6J8 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 GNL2P1-201ENST00000451274 2190 ntBASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 AL049780.3-201ENST00000624612 1583 ntBASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 RBPJP7-201ENST00000442803 1447 ntBASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 RBPJP5-201ENST00000449433 1447 ntBASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 Y_RNA.67-201ENST00000362870 100 ntBASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 RNU6-359P-201ENST00000365466 108 ntBASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 Y_RNA.422-201ENST00000384054 114 ntBASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 SNORA70.9-201ENST00000384370 135 ntBASIC5.69□□□□□ -1.5
UBE3DQ7Z6J8 RNU6-738P-201ENST00000384531 106 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 157.8 ms