Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL18A1P39060 OR10J6P-201ENST00000289731 930 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL18A1P39060 RN7SKP74-201ENST00000362849 309 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 MIR513A2-201ENST00000385249 127 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AC063979.1-201ENST00000415539 377 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 HSPE1P27-201ENST00000430808 296 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 NPM1P48-201ENST00000436002 853 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 AC099563.1-201ENST00000456086 418 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 TCP11X3P-202ENST00000514289 1254 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 RN7SKP209-201ENST00000516888 304 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.63□□□□□ -1.67
COL18A1P39060 AC093524.1-201ENST00000564266 1094 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 MIR4433B-201ENST00000581329 102 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 AL669942.2-201ENST00000620352 697 ntBASIC4.63□□□□□ -1.67
COL18A1P39060 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
COL18A1P39060 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL18A1P39060 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
COL18A1P39060 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.62□□□□□ -1.67
COL18A1P39060 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL18A1P39060 DDX6P1-205ENST00000441966 1436 ntBASIC4.62□□□□□ -1.67
COL18A1P39060 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL18A1P39060 RPL21P109-201ENST00000422213 475 ntBASIC4.62□□□□□ -1.67
COL18A1P39060 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.62□□□□□ -1.67
COL18A1P39060 MOB1AP1-201ENST00000430903 535 ntBASIC4.62□□□□□ -1.67
COL18A1P39060 AL831737.1-201ENST00000441288 271 ntBASIC4.62□□□□□ -1.67
COL18A1P39060 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.62□□□□□ -1.67
COL18A1P39060 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.62□□□□□ -1.67
COL18A1P39060 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.62□□□□□ -1.67
COL18A1P39060 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL18A1P39060 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
COL18A1P39060 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.67
COL18A1P39060 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL18A1P39060 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.62□□□□□ -1.67
COL18A1P39060 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
COL18A1P39060 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL18A1P39060 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.61□□□□□ -1.67
COL18A1P39060 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
COL18A1P39060 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL18A1P39060 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL18A1P39060 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.61□□□□□ -1.67
COL18A1P39060 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
COL18A1P39060 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL18A1P39060 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.61□□□□□ -1.67
COL18A1P39060 AC084357.1-201ENST00000473404 255 ntBASIC4.61□□□□□ -1.67
COL18A1P39060 AC020893.1-201ENST00000502452 580 ntBASIC4.61□□□□□ -1.67
COL18A1P39060 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.61□□□□□ -1.67
COL18A1P39060 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.61□□□□□ -1.67
COL18A1P39060 AC009464.1-201ENST00000615731 469 ntBASIC4.61□□□□□ -1.67
COL18A1P39060 Xist_exon4.1-201ENST00000615964 126 ntBASIC4.61□□□□□ -1.67
COL18A1P39060 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.61□□□□□ -1.67
COL18A1P39060 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL18A1P39060 AC004944.1-201ENST00000517807 3059 ntBASIC4.61□□□□□ -1.67
COL18A1P39060 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
COL18A1P39060 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
COL18A1P39060 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL18A1P39060 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL18A1P39060 YES1-203ENST00000577961 4554 ntTSL 5 BASIC4.61□□□□□ -1.67
COL18A1P39060 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.61□□□□□ -1.67
COL18A1P39060 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL18A1P39060 U3.23-201ENST00000391132 200 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.6□□□□□ -1.67
COL18A1P39060 RPS20P1-201ENST00000434853 354 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 FCF1P8-201ENST00000510322 597 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.6□□□□□ -1.67
COL18A1P39060 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.6□□□□□ -1.67
COL18A1P39060 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.6□□□□□ -1.67
COL18A1P39060 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.6□□□□□ -1.67
COL18A1P39060 MTCO3P22-201ENST00000603219 784 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
COL18A1P39060 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL18A1P39060 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL18A1P39060 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL18A1P39060 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL18A1P39060 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.6□□□□□ -1.67
COL18A1P39060 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL18A1P39060 GSTA8P-201ENST00000404253 637 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 RSL24D1P1-201ENST00000404972 493 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 AL136131.1-201ENST00000406079 803 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 BX842559.1-201ENST00000419615 532 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 USP9YP36-201ENST00000424581 829 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 USP9YP31-201ENST00000431405 881 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 NANOGNBP1-201ENST00000448444 480 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 NPM1P39-201ENST00000449818 867 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 PRELID3BP6-201ENST00000503839 571 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 AC069306.1-201ENST00000507006 843 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.6□□□□□ -1.67
COL18A1P39060 AC119674.1-212ENST00000641155 993 ntBASIC4.6□□□□□ -1.67
COL18A1P39060 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL18A1P39060 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.67
COL18A1P39060 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
COL18A1P39060 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms