Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.2□□□□□ -1.42
MSX1P28360 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 MTND5P27-201ENST00000428871 1720 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 HSPE1P11-201ENST00000339579 310 ntBASIC6.2□□□□□ -1.42
MSX1P28360 RNU6-238P-201ENST00000363313 106 ntBASIC6.2□□□□□ -1.42
MSX1P28360 RNU5E-8P-201ENST00000363502 116 ntBASIC6.2□□□□□ -1.42
MSX1P28360 Y_RNA.167-201ENST00000363735 109 ntBASIC6.2□□□□□ -1.42
MSX1P28360 SNORD113-7-201ENST00000363762 77 ntBASIC6.2□□□□□ -1.42
MSX1P28360 RN7SKP250-201ENST00000363924 321 ntBASIC6.2□□□□□ -1.42
MSX1P28360 RN7SKP130-201ENST00000364924 301 ntBASIC6.2□□□□□ -1.42
MSX1P28360 Y_RNA.489-201ENST00000384410 101 ntBASIC6.2□□□□□ -1.42
MSX1P28360 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
MSX1P28360 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 AL133384.1-201ENST00000412744 351 ntBASIC6.2□□□□□ -1.42
MSX1P28360 SKA2P1-201ENST00000425592 390 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AL669831.1-202ENST00000428504 417 ntBASIC6.2□□□□□ -1.42
MSX1P28360 HMGB1P12-201ENST00000438594 598 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 RPL5P30-201ENST00000465511 891 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AL049714.1-201ENST00000466686 347 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AC128716.1-201ENST00000475129 166 ntBASIC6.2□□□□□ -1.42
MSX1P28360 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX1P28360 AC093267.1-201ENST00000489176 961 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AC055855.1-201ENST00000489563 579 ntBASIC6.2□□□□□ -1.42
MSX1P28360 RN7SL568P-201ENST00000493069 298 ntBASIC6.2□□□□□ -1.42
MSX1P28360 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX1P28360 B3GNTL1P1-201ENST00000509174 289 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AC002456.2-201ENST00000509356 380 ntBASIC6.2□□□□□ -1.42
MSX1P28360 PRMT5P1-201ENST00000514351 598 ntBASIC6.2□□□□□ -1.42
MSX1P28360 Y_RNA.668-201ENST00000516233 93 ntBASIC6.2□□□□□ -1.42
MSX1P28360 RNA5SP473-201ENST00000516402 125 ntBASIC6.2□□□□□ -1.42
MSX1P28360 RNU6-1038P-201ENST00000516516 104 ntBASIC6.2□□□□□ -1.42
MSX1P28360 RN7SKP99-201ENST00000517028 307 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX1P28360 AC116917.1-201ENST00000520558 305 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX1P28360 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.2□□□□□ -1.42
MSX1P28360 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX1P28360 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX1P28360 MIR4775-201ENST00000581168 75 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC6.2□□□□□ -1.42
MSX1P28360 AC068790.3-201ENST00000602988 553 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AL590032.1-201ENST00000604920 252 ntBASIC6.2□□□□□ -1.42
MSX1P28360 MIR7109-201ENST00000613748 65 ntBASIC6.2□□□□□ -1.42
MSX1P28360 FAM157A-202ENST00000615155 405 ntBASIC6.2□□□□□ -1.42
MSX1P28360 MIR6823-201ENST00000622118 61 ntBASIC6.2□□□□□ -1.42
MSX1P28360 MIR6503-201ENST00000622884 86 ntBASIC6.2□□□□□ -1.42
MSX1P28360 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX1P28360 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 AC022031.1-201ENST00000585985 2593 ntBASIC6.2□□□□□ -1.42
MSX1P28360 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
MSX1P28360 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
MSX1P28360 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 AC005839.1-201ENST00000624148 3213 ntBASIC6.2□□□□□ -1.42
MSX1P28360 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 PNPT1P2-201ENST00000456768 2050 ntBASIC6.19□□□□□ -1.42
MSX1P28360 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 ZNF806-201ENST00000438300 1774 ntBASIC6.19□□□□□ -1.42
MSX1P28360 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
MSX1P28360 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 Y_RNA.212-201ENST00000364177 102 ntBASIC6.19□□□□□ -1.42
MSX1P28360 RNU1-24P-201ENST00000364285 165 ntBASIC6.19□□□□□ -1.42
MSX1P28360 Y_RNA.252-201ENST00000364556 101 ntBASIC6.19□□□□□ -1.42
MSX1P28360 Y_RNA.307-201ENST00000365022 117 ntBASIC6.19□□□□□ -1.42
MSX1P28360 Y_RNA.378-201ENST00000365652 113 ntBASIC6.19□□□□□ -1.42
MSX1P28360 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 Y_RNA.455-201ENST00000384230 98 ntBASIC6.19□□□□□ -1.42
MSX1P28360 RNU6-921P-201ENST00000384361 107 ntBASIC6.19□□□□□ -1.42
MSX1P28360 MIR640-201ENST00000385086 96 ntBASIC6.19□□□□□ -1.42
MSX1P28360 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms