Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.01□□□□□ -1.93
HLA-DMBP28068 AL391261.4-201ENST00000616012 481 ntBASIC3.01□□□□□ -1.93
HLA-DMBP28068 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.01□□□□□ -1.93
HLA-DMBP28068 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.01□□□□□ -1.93
HLA-DMBP28068 AC017002.4-201ENST00000604721 1525 ntBASIC3.01□□□□□ -1.93
HLA-DMBP28068 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
HLA-DMBP28068 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.01□□□□□ -1.93
HLA-DMBP28068 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.01□□□□□ -1.93
HLA-DMBP28068 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.01□□□□□ -1.93
HLA-DMBP28068 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.01□□□□□ -1.93
HLA-DMBP28068 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HLA-DMBP28068 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HLA-DMBP28068 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3□□□□□ -1.93
HLA-DMBP28068 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
HLA-DMBP28068 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3□□□□□ -1.93
HLA-DMBP28068 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 RPS4XP5-202ENST00000449995 1334 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3□□□□□ -1.93
HLA-DMBP28068 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 MAPK10-372ENST00000641954 3413 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3□□□□□ -1.93
HLA-DMBP28068 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3□□□□□ -1.93
HLA-DMBP28068 Y_RNA.126-201ENST00000363382 111 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 RNA5SP399-201ENST00000364003 117 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 RNU1-13P-201ENST00000384499 162 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3□□□□□ -1.93
HLA-DMBP28068 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3□□□□□ -1.93
HLA-DMBP28068 AC073464.3-201ENST00000422564 712 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 YY1P1-201ENST00000427625 668 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3□□□□□ -1.93
HLA-DMBP28068 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3□□□□□ -1.93
HLA-DMBP28068 RPS26P40-201ENST00000435209 294 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3□□□□□ -1.93
HLA-DMBP28068 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3□□□□□ -1.93
HLA-DMBP28068 RANP8-201ENST00000444720 713 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 HSFY6P-201ENST00000445573 403 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3□□□□□ -1.93
HLA-DMBP28068 RPL7L1P8-201ENST00000469911 741 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 MTND6P6-201ENST00000478031 263 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC005798.1-201ENST00000513715 387 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3□□□□□ -1.93
HLA-DMBP28068 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
HLA-DMBP28068 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3□□□□□ -1.93
HLA-DMBP28068 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3□□□□□ -1.93
HLA-DMBP28068 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3□□□□□ -1.93
HLA-DMBP28068 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC3□□□□□ -1.93
HLA-DMBP28068 AC006116.5-201ENST00000591936 559 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3□□□□□ -1.93
HLA-DMBP28068 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3□□□□□ -1.93
HLA-DMBP28068 MRPS35P3-201ENST00000603189 709 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC084373.1-201ENST00000603311 235 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC007423.1-201ENST00000605009 627 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3□□□□□ -1.93
HLA-DMBP28068 RNU4-89P-201ENST00000607443 133 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3□□□□□ -1.93
HLA-DMBP28068 MIR6868-201ENST00000611215 58 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC123768.4-201ENST00000616244 701 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC016957.2-201ENST00000616998 848 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 U7.8-201ENST00000619968 63 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC010608.2-201ENST00000624830 470 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AC092159.4-201ENST00000624944 550 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3□□□□□ -1.93
HLA-DMBP28068 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3□□□□□ -1.93
HLA-DMBP28068 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3□□□□□ -1.93
HLA-DMBP28068 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3□□□□□ -1.93
HLA-DMBP28068 IPO8P1-201ENST00000455509 3109 ntBASIC3□□□□□ -1.93
HLA-DMBP28068 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
HLA-DMBP28068 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3□□□□□ -1.93
HLA-DMBP28068 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3□□□□□ -1.93
HLA-DMBP28068 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 UBE3AP2-201ENST00000429033 2259 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HLA-DMBP28068 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HLA-DMBP28068 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HLA-DMBP28068 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
HLA-DMBP28068 SNORA60-201ENST00000362396 134 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
HLA-DMBP28068 HMGB3P19-201ENST00000403971 560 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 GLS-203ENST00000409215 632 ntTSL 4 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 TPT1P2-201ENST00000413105 503 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC006326.1-201ENST00000445465 787 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 RPS17P13-201ENST00000448974 407 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 AL136097.1-201ENST00000456945 913 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 AC007537.2-201ENST00000472093 511 ntBASIC2.99□□□□□ -1.93
HLA-DMBP28068 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC2.99□□□□□ -1.93
HLA-DMBP28068 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms