Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 RNU6-1066P-201ENST00000363573 105 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 RNU1-43P-201ENST00000365052 165 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VPS4BO75351 AL390316.1-201ENST00000406279 553 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AL139098.1-201ENST00000407291 389 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 PIGPP2-201ENST00000411569 458 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS4BO75351 NPM1P40-201ENST00000412758 733 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 OR6C64P-201ENST00000419708 825 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 Z99497.1-201ENST00000421282 135 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS4BO75351 AC108075.1-201ENST00000424692 529 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 MTCO3P30-201ENST00000426425 670 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 AC007559.1-201ENST00000428736 355 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 DLGAP5P1-201ENST00000430307 464 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AL049745.1-201ENST00000433953 286 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.05□□□□□ -1.6
VPS4BO75351 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 PSMD10P3-201ENST00000437000 448 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS4BO75351 MTND2P19-201ENST00000449129 1012 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AL591623.2-201ENST00000449978 222 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 DDX39BP2-208ENST00000453923 258 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 MTATP6P22-201ENST00000507369 598 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS4BO75351 HMGB3P13-201ENST00000511263 607 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC5.05□□□□□ -1.6
VPS4BO75351 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 RPS27AP18-201ENST00000515536 459 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS4BO75351 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 AC018442.3-201ENST00000523025 183 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 MTCYBP20-201ENST00000524239 1129 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AC092851.1-201ENST00000535964 478 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AC012213.3-201ENST00000577199 777 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS4BO75351 VN1R92P-201ENST00000598511 928 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AC005084.1-201ENST00000605160 304 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 RN7SKP299-201ENST00000606679 301 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AL353600.1-201ENST00000608148 251 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 AC005962.2-201ENST00000611427 652 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AC008083.4-201ENST00000615076 444 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AP003072.4-201ENST00000624580 310 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 MKKS-204ENST00000639674 192 ntBASIC5.05□□□□□ -1.6
VPS4BO75351 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
VPS4BO75351 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS4BO75351 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS4BO75351 CASC19-204ENST00000641001 2055 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 AC026951.1-201ENST00000559530 2459 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS4BO75351 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
VPS4BO75351 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS4BO75351 AL731566.1-201ENST00000620490 1937 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS4BO75351 RNU6-582P-201ENST00000362989 107 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 RNU1-106P-201ENST00000384382 164 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
VPS4BO75351 AL109941.1-201ENST00000401925 229 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AL133388.1-201ENST00000404509 287 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 RN7SKP16-201ENST00000410180 299 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 Y_RNA.599-201ENST00000410489 109 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 RNU2-42P-201ENST00000410697 113 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AC068533.2-201ENST00000411872 306 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS4BO75351 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS4BO75351 SKP1P3-201ENST00000429280 487 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS4BO75351 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AL031663.1-201ENST00000437445 219 ntBASIC5.04□□□□□ -1.6
VPS4BO75351 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms