Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
PCDHA3Q9Y5H8 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PCDHA3Q9Y5H8 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 AL121829.2-201ENST00000620908 328 ntBASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHA3Q9Y5H8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 FP475955.4-201ENST00000623131 1990 ntBASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 AC083880.1-201ENST00000608266 535 ntBASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 AC120498.9-201ENST00000339021 3867 ntBASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHA3Q9Y5H8 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms