Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
DDX28Q9NUL7 AL133373.2-201ENST00000623187 2828 ntBASIC17.67■□□□□ 0.42
DDX28Q9NUL7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 MCRIP2P1-201ENST00000394346 511 ntBASIC17.66■□□□□ 0.42
DDX28Q9NUL7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
DDX28Q9NUL7 AL032819.2-201ENST00000624543 2162 ntBASIC17.66■□□□□ 0.42
DDX28Q9NUL7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 AC231657.2-201ENST00000624556 255 ntBASIC17.65■□□□□ 0.42
DDX28Q9NUL7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms