Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.58■□□□□ 0.89
ZNF558Q96NG5 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.58■□□□□ 0.89
ZNF558Q96NG5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF558Q96NG5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF558Q96NG5 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF558Q96NG5 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
ZNF558Q96NG5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF558Q96NG5 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF558Q96NG5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF558Q96NG5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 AC073314.1-201ENST00000568729 2216 ntBASIC20.57■□□□□ 0.88
ZNF558Q96NG5 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
ZNF558Q96NG5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 KRT18P38-201ENST00000449496 1282 ntBASIC20.56■□□□□ 0.88
ZNF558Q96NG5 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 AL512408.1-201ENST00000569378 2000 ntBASIC20.56■□□□□ 0.88
ZNF558Q96NG5 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
ZNF558Q96NG5 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 AC093458.2-201ENST00000623150 629 ntBASIC20.55■□□□□ 0.88
ZNF558Q96NG5 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF558Q96NG5 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 AC005332.1-201ENST00000577698 1310 ntBASIC20.54■□□□□ 0.88
ZNF558Q96NG5 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 NEK4P2-201ENST00000580004 1012 ntBASIC20.54■□□□□ 0.88
ZNF558Q96NG5 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF558Q96NG5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ZNF558Q96NG5 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF558Q96NG5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF558Q96NG5 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms