Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 SLC29A4P1-201ENST00000398760 971 ntBASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 AL138781.2-201ENST00000617896 1843 ntBASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 NCF1B-203ENST00000435988 1254 ntBASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 MYC-209ENST00000641252 345 ntBASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.03■□□□□ 0.8
ATG4AQ8WYN0 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.02■□□□□ 0.8
ATG4AQ8WYN0 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.02■□□□□ 0.79
ATG4AQ8WYN0 AC104581.1-202ENST00000635932 2618 ntBASIC20.02■□□□□ 0.79
ATG4AQ8WYN0 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
ATG4AQ8WYN0 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ATG4AQ8WYN0 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ATG4AQ8WYN0 AP006587.1-201ENST00000534129 1502 ntBASIC20.02■□□□□ 0.79
ATG4AQ8WYN0 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ATG4AQ8WYN0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 FP475955.4-201ENST00000623131 1990 ntBASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms