Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 GLDC-218ENST00000639954 3279 ntTSL 57.51□□□□□ -1.212e-9■■□□□ 12.1
DDX55Q8NHQ9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC32.56■■■□□ 2.84e-8■■□□□ 12
DDX55Q8NHQ9 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.17■■■□□ 2.584e-8■■□□□ 12
DDX55Q8NHQ9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC28.89■■■□□ 2.224e-8■■□□□ 12
DDX55Q8NHQ9 UBALD1-204ENST00000588691 281 ntTSL 328.81■■■□□ 2.24e-8■■□□□ 12
DDX55Q8NHQ9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.114e-8■■□□□ 12
DDX55Q8NHQ9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC26.25■■□□□ 1.794e-8■■□□□ 12
DDX55Q8NHQ9 SMTN-224ENST00000624247 1263 ntTSL 526.19■■□□□ 1.784e-8■■□□□ 12
DDX55Q8NHQ9 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC24.47■■□□□ 1.514e-8■■□□□ 12
DDX55Q8NHQ9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC22.96■■□□□ 1.274e-8■■□□□ 12
DDX55Q8NHQ9 CDC37-208ENST00000590632 601 ntTSL 222.09■■□□□ 1.134e-8■■□□□ 12
DDX55Q8NHQ9 MLST8-209ENST00000562479 581 ntTSL 320.73■□□□□ 0.914e-8■■□□□ 12
DDX55Q8NHQ9 CDC37-204ENST00000589331 537 ntTSL 219.46■□□□□ 0.714e-8■■□□□ 12
DDX55Q8NHQ9 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.96■□□□□ 0.634e-8■■□□□ 12
DDX55Q8NHQ9 SGSM3-207ENST00000469719 1029 ntTSL 518.63■□□□□ 0.573e-6■■□□□ 12
DDX55Q8NHQ9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.576e-7■■□□□ 12
DDX55Q8NHQ9 MLST8-211ENST00000562851 575 ntTSL 418.02■□□□□ 0.484e-8■■□□□ 12
DDX55Q8NHQ9 MLST8-234ENST00000569848 573 ntTSL 417.86■□□□□ 0.454e-8■■□□□ 12
DDX55Q8NHQ9 YIF1B-211ENST00000589247 734 ntTSL 217.66■□□□□ 0.422e-23■■□□□ 12
DDX55Q8NHQ9 SGSM3-202ENST00000417424 666 ntTSL 517.61■□□□□ 0.413e-6■■□□□ 12
DDX55Q8NHQ9 CDC37-206ENST00000589629 728 ntTSL 317.2■□□□□ 0.344e-8■■□□□ 12
DDX55Q8NHQ9 XAB2-202ENST00000595288 4555 ntTSL 217.06■□□□□ 0.324e-8■■□□□ 12
DDX55Q8NHQ9 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.316e-7■■□□□ 12
DDX55Q8NHQ9 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.266e-7■■□□□ 12
DDX55Q8NHQ9 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.234e-8■■□□□ 12
DDX55Q8NHQ9 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC16.22■□□□□ 0.194e-8■■□□□ 12
DDX55Q8NHQ9 AAAS-220ENST00000552876 2016 ntTSL 215.92■□□□□ 0.144e-8■■□□□ 12
DDX55Q8NHQ9 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.16e-7■■□□□ 12
DDX55Q8NHQ9 SMTN-219ENST00000493335 2937 ntTSL 215.34■□□□□ 0.054e-8■■□□□ 12
DDX55Q8NHQ9 MLST8-233ENST00000569457 792 ntTSL 515.09■□□□□ 0.014e-8■■□□□ 12
DDX55Q8NHQ9 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 06e-7■■□□□ 12
DDX55Q8NHQ9 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.95□□□□□ -0.024e-8■■□□□ 12
DDX55Q8NHQ9 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.94□□□□□ -0.024e-8■■□□□ 12
DDX55Q8NHQ9 AAAS-212ENST00000548931 1075 ntTSL 514.89□□□□□ -0.034e-8■■□□□ 12
DDX55Q8NHQ9 SMTN-221ENST00000504335 2608 ntTSL 214.73□□□□□ -0.054e-8■■□□□ 12
DDX55Q8NHQ9 AAAS-201ENST00000209873 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.064e-8■■□□□ 12
DDX55Q8NHQ9 SMTN-215ENST00000472911 543 ntTSL 214.58□□□□□ -0.084e-8■■□□□ 12
DDX55Q8NHQ9 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.14e-8■■□□□ 12
DDX55Q8NHQ9 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.133e-6■■□□□ 12
DDX55Q8NHQ9 XAB2-201ENST00000358368 2667 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.144e-8■■□□□ 12
DDX55Q8NHQ9 DNM1-214ENST00000630850 3442 ntTSL 214.03□□□□□ -0.166e-7■■□□□ 12
DDX55Q8NHQ9 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.174e-8■■□□□ 12
DDX55Q8NHQ9 MLST8-217ENST00000564319 557 ntTSL 414□□□□□ -0.174e-8■■□□□ 12
DDX55Q8NHQ9 SMTN-222ENST00000612341 3321 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.234e-8■■□□□ 12
DDX55Q8NHQ9 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.236e-7■■□□□ 12
DDX55Q8NHQ9 MLST8-210ENST00000562844 575 ntTSL 413.46□□□□□ -0.254e-8■■□□□ 12
DDX55Q8NHQ9 MLST8-228ENST00000567623 855 ntTSL 312.79□□□□□ -0.364e-8■■□□□ 12
DDX55Q8NHQ9 SGSM3-213ENST00000485962 2973 ntTSL 512.7□□□□□ -0.383e-6■■□□□ 12
DDX55Q8NHQ9 SGSM3-209ENST00000478085 4218 ntTSL 212.61□□□□□ -0.393e-6■■□□□ 12
DDX55Q8NHQ9 SMTN-218ENST00000489337 3560 ntTSL 212.48□□□□□ -0.414e-8■■□□□ 12
DDX55Q8NHQ9 QTRT1-207ENST00000589488 1571 ntTSL 526.06■■□□□ 1.762e-8■■□□□ 12
DDX55Q8NHQ9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.562e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-204ENST00000409924 567 ntTSL 324.42■■□□□ 1.52e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-211ENST00000480489 527 ntTSL 224.42■■□□□ 1.52e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-203ENST00000399032 593 ntTSL 423.49■■□□□ 1.352e-8■■□□□ 12
DDX55Q8NHQ9 QTRT1-202ENST00000421333 1502 ntTSL 222.11■■□□□ 1.132e-8■■□□□ 12
DDX55Q8NHQ9 QTRT1-205ENST00000587599 994 ntTSL 321.48■■□□□ 1.032e-8■■□□□ 12
DDX55Q8NHQ9 QTRT1-206ENST00000587861 2034 ntTSL 219.37■□□□□ 0.692e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-208ENST00000471927 556 ntTSL 419.08■□□□□ 0.642e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-209ENST00000473197 595 ntTSL 419.08■□□□□ 0.642e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-205ENST00000461290 1018 ntTSL 218.32■□□□□ 0.522e-8■■□□□ 12
DDX55Q8NHQ9 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.392e-20■■□□□ 12
DDX55Q8NHQ9 CCT7-207ENST00000469844 612 ntTSL 416.62■□□□□ 0.252e-8■■□□□ 12
DDX55Q8NHQ9 FKBP1A-209ENST00000612074 409 ntTSL 215.3■□□□□ 0.042e-8■■□□□ 12
DDX55Q8NHQ9 FKBP1A-201ENST00000381715 705 ntTSL 2 BASIC15.03■□□□□ -02e-8■■□□□ 12
DDX55Q8NHQ9 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.192e-20■■□□□ 12
DDX55Q8NHQ9 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.22e-8■■□□□ 12
DDX55Q8NHQ9 FKBP1A-202ENST00000381719 747 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.392e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-210ENST00000473786 811 ntTSL 512.38□□□□□ -0.432e-8■■□□□ 12
DDX55Q8NHQ9 HCFC1-203ENST00000444191 3624 ntTSL 512.1□□□□□ -0.472e-20■■□□□ 12
DDX55Q8NHQ9 CCT7-212ENST00000482064 567 ntTSL 410.53□□□□□ -0.722e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-214ENST00000492253 531 ntTSL 48.45□□□□□ -1.062e-8■■□□□ 12
DDX55Q8NHQ9 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.87□□□□□ -1.632e-8■■□□□ 12
DDX55Q8NHQ9 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.42e-7■■□□□ 12
DDX55Q8NHQ9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.68■■□□□ 1.062e-13■■□□□ 12
DDX55Q8NHQ9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.612e-13■■□□□ 12
DDX55Q8NHQ9 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.552e-13■■□□□ 12
DDX55Q8NHQ9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.472e-13■■□□□ 12
DDX55Q8NHQ9 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.442e-13■■□□□ 12
DDX55Q8NHQ9 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.192e-13■■□□□ 12
DDX55Q8NHQ9 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.142e-13■■□□□ 12
DDX55Q8NHQ9 MCRIP1-209ENST00000575090 752 ntTSL 327.78■■■□□ 2.044e-7■■□□□ 12
DDX55Q8NHQ9 COL27A1-207ENST00000494090 5329 ntTSL 1 (best)20.94■□□□□ 0.949e-7■■□□□ 12
DDX55Q8NHQ9 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.63e-8■■□□□ 12
DDX55Q8NHQ9 DPP7-206ENST00000473532 1144 ntTSL 521.04■□□□□ 0.963e-8■■□□□ 12
DDX55Q8NHQ9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.831e-8■■□□□ 12
DDX55Q8NHQ9 NINJ1-204ENST00000489274 2026 ntTSL 216.09■□□□□ 0.171e-8■■□□□ 12
DDX55Q8NHQ9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.892e-7■■□□□ 12
DDX55Q8NHQ9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.73■■□□□ 1.872e-7■■□□□ 12
DDX55Q8NHQ9 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC22.15■■□□□ 1.142e-7■■□□□ 12
DDX55Q8NHQ9 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC36.27■■■■□ 3.49e-8■■□□□ 12
DDX55Q8NHQ9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC35.05■■■■□ 3.29e-8■■□□□ 12
DDX55Q8NHQ9 NT5DC2-215ENST00000492555 2004 ntTSL 1 (best)19.39■□□□□ 0.699e-8■■□□□ 12
DDX55Q8NHQ9 NT5DC2-204ENST00000462261 1619 ntTSL 217.78■□□□□ 0.449e-8■■□□□ 12
DDX55Q8NHQ9 NT5DC2-205ENST00000463947 670 ntTSL 316.84■□□□□ 0.299e-8■■□□□ 12
DDX55Q8NHQ9 NT5DC2-210ENST00000479024 1714 ntTSL 216.27■□□□□ 0.199e-8■■□□□ 12
DDX55Q8NHQ9 NT5DC2-201ENST00000307076 2047 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.179e-8■■□□□ 12
DDX55Q8NHQ9 COPG1-210ENST00000515725 3231 ntTSL 210.22□□□□□ -0.771e-15■■□□□ 12
DDX55Q8NHQ9 COPG1-201ENST00000314797 3078 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.91e-15■■□□□ 12
DDX55Q8NHQ9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.956e-20■■□□□ 12
Retrieved 100 of 15,504 protein–RNA pairs in 220.6 ms