Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.83■□□□□ 0.77
SLC44A3Q8N4M1 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
SLC44A3Q8N4M1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
SLC44A3Q8N4M1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.83■□□□□ 0.76
SLC44A3Q8N4M1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.83■□□□□ 0.76
SLC44A3Q8N4M1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SLC44A3Q8N4M1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
SLC44A3Q8N4M1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.83■□□□□ 0.76
SLC44A3Q8N4M1 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.83■□□□□ 0.76
SLC44A3Q8N4M1 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 TSPY21P-201ENST00000433481 731 ntBASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 TSPY23P-201ENST00000440136 739 ntBASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 BX119927.1-201ENST00000636596 1552 ntBASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SLC44A3Q8N4M1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 NPAP1P7-201ENST00000613027 823 ntBASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 AP001271.2-201ENST00000624018 1556 ntBASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.81■□□□□ 0.76
SLC44A3Q8N4M1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SLC44A3Q8N4M1 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC44A3Q8N4M1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.79■□□□□ 0.76
SLC44A3Q8N4M1 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC44A3Q8N4M1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SLC44A3Q8N4M1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC44A3Q8N4M1 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms