Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 AP002982.1-201ENST00000492365 877 ntBASIC18.93■□□□□ 0.62
VRK3Q8IV63 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 Z99916.2-201ENST00000604037 246 ntBASIC18.93■□□□□ 0.62
VRK3Q8IV63 AL353708.3-201ENST00000610272 989 ntBASIC18.93■□□□□ 0.62
VRK3Q8IV63 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VRK3Q8IV63 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.93■□□□□ 0.62
VRK3Q8IV63 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.92■□□□□ 0.62
VRK3Q8IV63 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.92■□□□□ 0.62
VRK3Q8IV63 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.92■□□□□ 0.62
VRK3Q8IV63 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.92■□□□□ 0.62
VRK3Q8IV63 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.92■□□□□ 0.62
VRK3Q8IV63 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 AL445675.2-201ENST00000620291 557 ntBASIC18.92■□□□□ 0.62
VRK3Q8IV63 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.92■□□□□ 0.62
VRK3Q8IV63 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VRK3Q8IV63 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VRK3Q8IV63 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VRK3Q8IV63 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 RPS2P55-201ENST00000397318 883 ntBASIC18.91■□□□□ 0.62
VRK3Q8IV63 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.91■□□□□ 0.62
VRK3Q8IV63 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VRK3Q8IV63 AC107956.1-201ENST00000494359 873 ntBASIC18.91■□□□□ 0.62
VRK3Q8IV63 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 AL160286.2-201ENST00000567150 934 ntBASIC18.91■□□□□ 0.62
VRK3Q8IV63 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VRK3Q8IV63 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
VRK3Q8IV63 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 TEX21P-204ENST00000641479 1693 ntBASIC18.9■□□□□ 0.62
VRK3Q8IV63 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 AL353807.1-201ENST00000427475 662 ntBASIC18.9■□□□□ 0.62
VRK3Q8IV63 AC004980.1-204ENST00000429707 299 ntBASIC18.9■□□□□ 0.62
VRK3Q8IV63 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 CR392000.1-201ENST00000624770 1228 ntBASIC18.9■□□□□ 0.62
VRK3Q8IV63 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.9■□□□□ 0.62
VRK3Q8IV63 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms