Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 AC011484.1-201ENST00000377652 1995 ntBASIC12.12□□□□□ -0.47
LINC00643Q86TS7 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 AC135776.1-201ENST00000319817 2481 ntBASIC12.11□□□□□ -0.47
LINC00643Q86TS7 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 RP9P-202ENST00000450133 1212 ntBASIC12.11□□□□□ -0.47
LINC00643Q86TS7 AL157400.5-201ENST00000507624 621 ntBASIC12.11□□□□□ -0.47
LINC00643Q86TS7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LINC00643Q86TS7 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 AC063926.3-201ENST00000624734 5658 ntBASIC12.1□□□□□ -0.47
LINC00643Q86TS7 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 NKILA-202ENST00000614771 2598 ntBASIC12.1□□□□□ -0.47
LINC00643Q86TS7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms