Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 BID-212ENST00000614949 1988 ntTSL 5 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 CALM1-205ENST00000553542 877 ntTSL 5 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
NPHP3Q7Z494 EP400NL-214ENST00000641289 2402 ntBASIC26.3■■□□□ 1.8
NPHP3Q7Z494 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 AL022342.1-201ENST00000400363 863 ntBASIC26.3■■□□□ 1.8
NPHP3Q7Z494 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 AP002414.4-201ENST00000589764 1148 ntBASIC26.3■■□□□ 1.8
NPHP3Q7Z494 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP3Q7Z494 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 TBC1D3P2-202ENST00000577902 1649 ntBASIC26.29■■□□□ 1.8
NPHP3Q7Z494 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 AL031008.1-201ENST00000619963 541 ntBASIC26.29■■□□□ 1.8
NPHP3Q7Z494 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC26.29■■□□□ 1.8
NPHP3Q7Z494 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 FEM1AP1-201ENST00000431297 1995 ntBASIC26.28■■□□□ 1.8
NPHP3Q7Z494 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
NPHP3Q7Z494 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 AC104692.2-201ENST00000603054 253 ntBASIC26.27■■□□□ 1.8
NPHP3Q7Z494 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
NPHP3Q7Z494 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 EMBP1-201ENST00000458200 901 ntBASIC26.26■■□□□ 1.79
NPHP3Q7Z494 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP3Q7Z494 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 TSPY19P-201ENST00000418461 509 ntBASIC26.25■■□□□ 1.79
NPHP3Q7Z494 TSPY18P-201ENST00000441642 509 ntBASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms