Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.91■□□□□ 0.94
KRT39Q6A163 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT39Q6A163 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
KRT39Q6A163 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.9■□□□□ 0.94
KRT39Q6A163 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.9■□□□□ 0.94
KRT39Q6A163 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.9■□□□□ 0.94
KRT39Q6A163 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.9■□□□□ 0.94
KRT39Q6A163 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.9■□□□□ 0.94
KRT39Q6A163 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
KRT39Q6A163 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
KRT39Q6A163 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
KRT39Q6A163 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
KRT39Q6A163 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.89■□□□□ 0.94
KRT39Q6A163 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
KRT39Q6A163 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
KRT39Q6A163 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
KRT39Q6A163 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
KRT39Q6A163 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
KRT39Q6A163 HTR7P1-201ENST00000538670 1336 ntBASIC20.89■□□□□ 0.93
KRT39Q6A163 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT39Q6A163 LINC01465-201ENST00000408887 1940 ntBASIC20.89■□□□□ 0.93
KRT39Q6A163 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.89■□□□□ 0.93
KRT39Q6A163 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.89■□□□□ 0.93
KRT39Q6A163 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.89■□□□□ 0.93
KRT39Q6A163 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.89■□□□□ 0.93
KRT39Q6A163 AC098590.1-201ENST00000468126 897 ntBASIC20.89■□□□□ 0.93
KRT39Q6A163 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.89■□□□□ 0.93
KRT39Q6A163 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.89■□□□□ 0.93
KRT39Q6A163 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
KRT39Q6A163 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.89■□□□□ 0.93
KRT39Q6A163 AC142381.4-202ENST00000563973 229 ntBASIC20.89■□□□□ 0.93
KRT39Q6A163 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
KRT39Q6A163 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT39Q6A163 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT39Q6A163 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
KRT39Q6A163 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
KRT39Q6A163 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.89■□□□□ 0.93
KRT39Q6A163 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.89■□□□□ 0.93
KRT39Q6A163 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.89■□□□□ 0.93
KRT39Q6A163 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
KRT39Q6A163 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.88■□□□□ 0.93
KRT39Q6A163 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.88■□□□□ 0.93
KRT39Q6A163 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.88■□□□□ 0.93
KRT39Q6A163 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.88■□□□□ 0.93
KRT39Q6A163 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.88■□□□□ 0.93
KRT39Q6A163 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
KRT39Q6A163 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.88■□□□□ 0.93
KRT39Q6A163 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.88■□□□□ 0.93
KRT39Q6A163 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.88■□□□□ 0.93
KRT39Q6A163 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.88■□□□□ 0.93
KRT39Q6A163 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.88■□□□□ 0.93
KRT39Q6A163 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT39Q6A163 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT39Q6A163 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 GCSHP5-201ENST00000443090 522 ntBASIC20.87■□□□□ 0.93
KRT39Q6A163 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.87■□□□□ 0.93
KRT39Q6A163 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT39Q6A163 AL160286.2-201ENST00000567150 934 ntBASIC20.87■□□□□ 0.93
KRT39Q6A163 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.87■□□□□ 0.93
KRT39Q6A163 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
KRT39Q6A163 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.87■□□□□ 0.93
KRT39Q6A163 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.87■□□□□ 0.93
KRT39Q6A163 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.87■□□□□ 0.93
KRT39Q6A163 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
KRT39Q6A163 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms