Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
RC3H1Q5TC82 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC24.43■■□□□ 1.5
RC3H1Q5TC82 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RC3H1Q5TC82 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC24.43■■□□□ 1.5
RC3H1Q5TC82 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 RASA4DP-201ENST00000460726 1199 ntBASIC24.42■■□□□ 1.5
RC3H1Q5TC82 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 MIR3652-201ENST00000579335 131 ntBASIC24.42■■□□□ 1.5
RC3H1Q5TC82 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H1Q5TC82 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 SDHD-206ENST00000528182 754 ntTSL 3 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 PRR29-207ENST00000580752 458 ntTSL 3 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H1Q5TC82 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 AC246785.2-201ENST00000432512 513 ntBASIC24.4■■□□□ 1.5
RC3H1Q5TC82 AC092597.1-201ENST00000487352 616 ntBASIC24.4■■□□□ 1.5
RC3H1Q5TC82 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 AC092329.2-201ENST00000598402 547 ntBASIC24.4■■□□□ 1.5
RC3H1Q5TC82 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H1Q5TC82 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.5
RC3H1Q5TC82 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.5
RC3H1Q5TC82 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC24.39■■□□□ 1.5
RC3H1Q5TC82 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
RC3H1Q5TC82 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
RC3H1Q5TC82 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC24.39■■□□□ 1.5
RC3H1Q5TC82 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
RC3H1Q5TC82 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 FDX1P1-201ENST00000449115 551 ntBASIC24.39■■□□□ 1.49
RC3H1Q5TC82 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 MIR3180-1-201ENST00000580374 94 ntBASIC24.39■■□□□ 1.49
RC3H1Q5TC82 RN7SL510P-201ENST00000581311 263 ntBASIC24.39■■□□□ 1.49
RC3H1Q5TC82 MIR3180-3-201ENST00000584616 94 ntBASIC24.39■■□□□ 1.49
RC3H1Q5TC82 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
RC3H1Q5TC82 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 AC034232.1-201ENST00000506026 1064 ntBASIC24.38■■□□□ 1.49
RC3H1Q5TC82 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
RC3H1Q5TC82 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms