Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHD9Q3L8U1 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 KRT8P11-201ENST00000409686 1436 ntBASIC20.56■□□□□ 0.88
CHD9Q3L8U1 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 AL160286.2-201ENST00000567150 934 ntBASIC20.56■□□□□ 0.88
CHD9Q3L8U1 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHD9Q3L8U1 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 RASA4DP-201ENST00000460726 1199 ntBASIC20.55■□□□□ 0.88
CHD9Q3L8U1 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 AC004870.1-201ENST00000315132 882 ntBASIC20.55■□□□□ 0.88
CHD9Q3L8U1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 KRT16P4-201ENST00000453883 522 ntBASIC20.55■□□□□ 0.88
CHD9Q3L8U1 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.55■□□□□ 0.88
CHD9Q3L8U1 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 MRPL3P1-201ENST00000400109 1033 ntBASIC20.54■□□□□ 0.88
CHD9Q3L8U1 TSPY19P-201ENST00000418461 509 ntBASIC20.54■□□□□ 0.88
CHD9Q3L8U1 HLA-F-220ENST00000434407 884 ntBASIC20.54■□□□□ 0.88
CHD9Q3L8U1 TSPY18P-201ENST00000441642 509 ntBASIC20.54■□□□□ 0.88
CHD9Q3L8U1 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHD9Q3L8U1 KRT8P8-201ENST00000434750 1448 ntBASIC20.53■□□□□ 0.88
CHD9Q3L8U1 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 PMS2P1-201ENST00000431037 1228 ntBASIC20.53■□□□□ 0.88
CHD9Q3L8U1 BX276092.5-203ENST00000456199 560 ntBASIC20.53■□□□□ 0.88
CHD9Q3L8U1 AC092183.1-201ENST00000469884 875 ntBASIC20.53■□□□□ 0.88
CHD9Q3L8U1 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 AC007225.1-201ENST00000566331 1836 ntBASIC20.53■□□□□ 0.88
CHD9Q3L8U1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 FEM1AP1-201ENST00000431297 1995 ntBASIC20.53■□□□□ 0.88
CHD9Q3L8U1 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms