Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
RFX4Q33E94 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX4Q33E94 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
RFX4Q33E94 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.99■□□□□ 0.47
RFX4Q33E94 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX4Q33E94 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.99■□□□□ 0.47
RFX4Q33E94 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX4Q33E94 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX4Q33E94 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.98■□□□□ 0.47
RFX4Q33E94 MFSD11-216ENST00000590393 1141 ntBASIC17.98■□□□□ 0.47
RFX4Q33E94 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.98■□□□□ 0.47
RFX4Q33E94 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.98■□□□□ 0.47
RFX4Q33E94 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
RFX4Q33E94 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.98■□□□□ 0.47
RFX4Q33E94 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX4Q33E94 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX4Q33E94 WIZP1-201ENST00000531444 2299 ntBASIC17.97■□□□□ 0.47
RFX4Q33E94 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 AC020916.1-201ENST00000587762 1774 ntBASIC17.97■□□□□ 0.47
RFX4Q33E94 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.97■□□□□ 0.47
RFX4Q33E94 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX4Q33E94 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 HLA-G-202ENST00000376815 851 ntBASIC17.97■□□□□ 0.47
RFX4Q33E94 HLA-G-203ENST00000376818 1127 ntBASIC17.97■□□□□ 0.47
RFX4Q33E94 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.97■□□□□ 0.47
RFX4Q33E94 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.97■□□□□ 0.47
RFX4Q33E94 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.97■□□□□ 0.47
RFX4Q33E94 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX4Q33E94 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RFX4Q33E94 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX4Q33E94 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX4Q33E94 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
RFX4Q33E94 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX4Q33E94 AC068338.2-201ENST00000563278 1430 ntBASIC17.97■□□□□ 0.47
RFX4Q33E94 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX4Q33E94 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX4Q33E94 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.97■□□□□ 0.47
RFX4Q33E94 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX4Q33E94 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.96■□□□□ 0.47
RFX4Q33E94 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.96■□□□□ 0.47
RFX4Q33E94 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.96■□□□□ 0.47
RFX4Q33E94 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.96■□□□□ 0.47
RFX4Q33E94 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.96■□□□□ 0.47
RFX4Q33E94 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.96■□□□□ 0.47
RFX4Q33E94 KRT18P68-201ENST00000392293 1000 ntBASIC17.96■□□□□ 0.47
RFX4Q33E94 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
RFX4Q33E94 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.96■□□□□ 0.47
RFX4Q33E94 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 AC087623.3-201ENST00000607047 1098 ntBASIC17.96■□□□□ 0.47
RFX4Q33E94 AC105020.6-201ENST00000621523 1217 ntBASIC17.96■□□□□ 0.47
RFX4Q33E94 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
RFX4Q33E94 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
RFX4Q33E94 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.96■□□□□ 0.47
RFX4Q33E94 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 AC005332.8-201ENST00000622750 2735 ntBASIC17.96■□□□□ 0.47
RFX4Q33E94 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX4Q33E94 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.96■□□□□ 0.47
RFX4Q33E94 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.96■□□□□ 0.46
RFX4Q33E94 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RFX4Q33E94 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.95■□□□□ 0.46
RFX4Q33E94 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
RFX4Q33E94 BICD1-207ENST00000551848 1962 ntBASIC17.95■□□□□ 0.46
RFX4Q33E94 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.95■□□□□ 0.46
RFX4Q33E94 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX4Q33E94 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms