Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.72■□□□□ 0.91
SOX4Q06945 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SOX4Q06945 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.72■□□□□ 0.91
SOX4Q06945 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.72■□□□□ 0.91
SOX4Q06945 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
SOX4Q06945 AC010203.1-204ENST00000548782 407 ntBASIC20.72■□□□□ 0.91
SOX4Q06945 FAM87A-204ENST00000613235 858 ntBASIC20.72■□□□□ 0.91
SOX4Q06945 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.72■□□□□ 0.91
SOX4Q06945 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.72■□□□□ 0.91
SOX4Q06945 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 TREX1-205ENST00000625293 1783 ntBASIC20.72■□□□□ 0.91
SOX4Q06945 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
SOX4Q06945 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.72■□□□□ 0.91
SOX4Q06945 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.71■□□□□ 0.91
SOX4Q06945 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SOX4Q06945 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
SOX4Q06945 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.71■□□□□ 0.91
SOX4Q06945 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.71■□□□□ 0.91
SOX4Q06945 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.71■□□□□ 0.91
SOX4Q06945 AC010331.1-201ENST00000611423 582 ntBASIC20.71■□□□□ 0.91
SOX4Q06945 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SOX4Q06945 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.71■□□□□ 0.91
SOX4Q06945 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
SOX4Q06945 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.71■□□□□ 0.91
SOX4Q06945 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX4Q06945 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.71■□□□□ 0.91
SOX4Q06945 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
SOX4Q06945 KRT8P11-201ENST00000409686 1436 ntBASIC20.7■□□□□ 0.9
SOX4Q06945 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.7■□□□□ 0.9
SOX4Q06945 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX4Q06945 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX4Q06945 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SOX4Q06945 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.7■□□□□ 0.9
SOX4Q06945 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX4Q06945 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SOX4Q06945 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SOX4Q06945 CKBP1-201ENST00000565489 1086 ntBASIC20.7■□□□□ 0.9
SOX4Q06945 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.7■□□□□ 0.9
SOX4Q06945 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.7■□□□□ 0.9
SOX4Q06945 AC092865.7-201ENST00000641832 219 ntBASIC20.7■□□□□ 0.9
SOX4Q06945 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
SOX4Q06945 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SOX4Q06945 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX4Q06945 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX4Q06945 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.7■□□□□ 0.9
SOX4Q06945 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX4Q06945 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX4Q06945 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX4Q06945 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.69■□□□□ 0.9
SOX4Q06945 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX4Q06945 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX4Q06945 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.69■□□□□ 0.9
SOX4Q06945 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.69■□□□□ 0.9
SOX4Q06945 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SOX4Q06945 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.69■□□□□ 0.9
SOX4Q06945 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.69■□□□□ 0.9
SOX4Q06945 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.69■□□□□ 0.9
SOX4Q06945 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX4Q06945 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.69■□□□□ 0.9
SOX4Q06945 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SOX4Q06945 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.69■□□□□ 0.9
SOX4Q06945 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SOX4Q06945 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
SOX4Q06945 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.69■□□□□ 0.9
SOX4Q06945 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.69■□□□□ 0.9
SOX4Q06945 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SOX4Q06945 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SOX4Q06945 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.68■□□□□ 0.9
SOX4Q06945 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
SOX4Q06945 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.68■□□□□ 0.9
SOX4Q06945 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.68■□□□□ 0.9
SOX4Q06945 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms