Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC15.58■□□□□ 0.08
CX3CL1P78423 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC15.58■□□□□ 0.08
CX3CL1P78423 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CX3CL1P78423 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CX3CL1P78423 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CX3CL1P78423 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CX3CL1P78423 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CX3CL1P78423 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CX3CL1P78423 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CX3CL1P78423 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
CX3CL1P78423 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CX3CL1P78423 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.58■□□□□ 0.08
CX3CL1P78423 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CX3CL1P78423 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.58■□□□□ 0.08
CX3CL1P78423 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.58■□□□□ 0.08
CX3CL1P78423 AP006587.1-201ENST00000534129 1502 ntBASIC15.58■□□□□ 0.08
CX3CL1P78423 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CX3CL1P78423 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CX3CL1P78423 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
CX3CL1P78423 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.57■□□□□ 0.08
CX3CL1P78423 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC15.57■□□□□ 0.08
CX3CL1P78423 ADM-205ENST00000528544 586 ntTSL 2 BASIC15.57■□□□□ 0.08
CX3CL1P78423 PRKY-204ENST00000533551 1019 ntBASIC15.57■□□□□ 0.08
CX3CL1P78423 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC15.57■□□□□ 0.08
CX3CL1P78423 MIR4651-201ENST00000582622 73 ntBASIC15.57■□□□□ 0.08
CX3CL1P78423 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC15.57■□□□□ 0.08
CX3CL1P78423 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC15.57■□□□□ 0.08
CX3CL1P78423 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC15.57■□□□□ 0.08
CX3CL1P78423 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.57■□□□□ 0.08
CX3CL1P78423 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
CX3CL1P78423 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CX3CL1P78423 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC15.57■□□□□ 0.08
CX3CL1P78423 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
CX3CL1P78423 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.57■□□□□ 0.08
CX3CL1P78423 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CX3CL1P78423 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CX3CL1P78423 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 AL158211.5-201ENST00000623583 2518 ntBASIC15.56■□□□□ 0.08
CX3CL1P78423 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 TREX2-204ENST00000370212 861 ntTSL 5 BASIC15.56■□□□□ 0.08
CX3CL1P78423 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CX3CL1P78423 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 POU5F1P3-201ENST00000428824 1078 ntBASIC15.56■□□□□ 0.08
CX3CL1P78423 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC15.56■□□□□ 0.08
CX3CL1P78423 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC15.56■□□□□ 0.08
CX3CL1P78423 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC15.56■□□□□ 0.08
CX3CL1P78423 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 AC069544.1-201ENST00000609399 999 ntBASIC15.56■□□□□ 0.08
CX3CL1P78423 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC15.56■□□□□ 0.08
CX3CL1P78423 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CX3CL1P78423 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.56■□□□□ 0.08
CX3CL1P78423 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.56■□□□□ 0.08
CX3CL1P78423 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.56■□□□□ 0.08
CX3CL1P78423 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CX3CL1P78423 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.55■□□□□ 0.08
CX3CL1P78423 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms