Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX2P48431 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SOX2P48431 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.02■□□□□ 0.32
SOX2P48431 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.02■□□□□ 0.32
SOX2P48431 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.02■□□□□ 0.32
SOX2P48431 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX2P48431 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX2P48431 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX2P48431 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.02■□□□□ 0.32
SOX2P48431 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX2P48431 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.31
SOX2P48431 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
SOX2P48431 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SOX2P48431 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
SOX2P48431 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SOX2P48431 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SOX2P48431 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 AC104581.1-202ENST00000635932 2618 ntBASIC17.01■□□□□ 0.31
SOX2P48431 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SOX2P48431 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 TEX21P-204ENST00000641479 1693 ntBASIC17.01■□□□□ 0.31
SOX2P48431 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX2P48431 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.01■□□□□ 0.31
SOX2P48431 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SOX2P48431 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX2P48431 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SOX2P48431 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
SOX2P48431 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SOX2P48431 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX2P48431 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX2P48431 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
SOX2P48431 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX2P48431 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SOX2P48431 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SOX2P48431 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.01■□□□□ 0.31
SOX2P48431 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX2P48431 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SOX2P48431 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17■□□□□ 0.31
SOX2P48431 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SOX2P48431 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SOX2P48431 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SOX2P48431 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17■□□□□ 0.31
SOX2P48431 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SOX2P48431 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17■□□□□ 0.31
SOX2P48431 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SOX2P48431 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 PLD4-205ENST00000553861 667 ntTSL 2 BASIC17■□□□□ 0.31
SOX2P48431 AC087623.3-201ENST00000607047 1098 ntBASIC17■□□□□ 0.31
SOX2P48431 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SOX2P48431 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17■□□□□ 0.31
SOX2P48431 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17■□□□□ 0.31
SOX2P48431 KRT17P1-201ENST00000399211 1546 ntBASIC17■□□□□ 0.31
SOX2P48431 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17■□□□□ 0.31
SOX2P48431 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17■□□□□ 0.31
SOX2P48431 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17■□□□□ 0.31
SOX2P48431 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX2P48431 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms