Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.93■□□□□ 0.78
COL9A1P20849 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
COL9A1P20849 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.93■□□□□ 0.78
COL9A1P20849 AL353719.1-201ENST00000566847 864 ntBASIC19.93■□□□□ 0.78
COL9A1P20849 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
COL9A1P20849 AP001160.2-201ENST00000596071 487 ntBASIC19.93■□□□□ 0.78
COL9A1P20849 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.93■□□□□ 0.78
COL9A1P20849 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
COL9A1P20849 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL9A1P20849 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.93■□□□□ 0.78
COL9A1P20849 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
COL9A1P20849 AC018553.1-201ENST00000616682 1458 ntBASIC19.92■□□□□ 0.78
COL9A1P20849 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.92■□□□□ 0.78
COL9A1P20849 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.92■□□□□ 0.78
COL9A1P20849 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
COL9A1P20849 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.92■□□□□ 0.78
COL9A1P20849 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 MFAP1P1-201ENST00000442257 1255 ntBASIC19.92■□□□□ 0.78
COL9A1P20849 BX276092.5-203ENST00000456199 560 ntBASIC19.92■□□□□ 0.78
COL9A1P20849 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.92■□□□□ 0.78
COL9A1P20849 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 AL121672.3-201ENST00000608644 468 ntBASIC19.92■□□□□ 0.78
COL9A1P20849 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 AC079834.2-201ENST00000609776 1949 ntBASIC19.92■□□□□ 0.78
COL9A1P20849 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL9A1P20849 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
COL9A1P20849 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL9A1P20849 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
COL9A1P20849 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL9A1P20849 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.91■□□□□ 0.78
COL9A1P20849 MIR940-201ENST00000401276 94 ntBASIC19.91■□□□□ 0.78
COL9A1P20849 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.91■□□□□ 0.78
COL9A1P20849 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.91■□□□□ 0.78
COL9A1P20849 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.91■□□□□ 0.78
COL9A1P20849 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.91■□□□□ 0.78
COL9A1P20849 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.91■□□□□ 0.78
COL9A1P20849 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL9A1P20849 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.91■□□□□ 0.78
COL9A1P20849 AC092720.2-201ENST00000602388 1665 ntBASIC19.91■□□□□ 0.78
COL9A1P20849 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.9■□□□□ 0.78
COL9A1P20849 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.9■□□□□ 0.78
COL9A1P20849 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL9A1P20849 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.9■□□□□ 0.78
COL9A1P20849 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 AL645929.1-201ENST00000420084 975 ntBASIC19.9■□□□□ 0.78
COL9A1P20849 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.9■□□□□ 0.78
COL9A1P20849 AC098831.1-202ENST00000438821 336 ntBASIC19.9■□□□□ 0.78
COL9A1P20849 AP002383.4-201ENST00000442518 975 ntBASIC19.9■□□□□ 0.78
COL9A1P20849 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.9■□□□□ 0.78
COL9A1P20849 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.9■□□□□ 0.78
COL9A1P20849 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.9■□□□□ 0.78
COL9A1P20849 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
COL9A1P20849 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.9■□□□□ 0.78
COL9A1P20849 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.9■□□□□ 0.78
COL9A1P20849 AC016734.2-201ENST00000624325 1377 ntBASIC19.9■□□□□ 0.78
COL9A1P20849 KRT16P6-202ENST00000425692 1426 ntBASIC19.9■□□□□ 0.78
COL9A1P20849 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.9■□□□□ 0.78
COL9A1P20849 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.9■□□□□ 0.78
COL9A1P20849 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.9■□□□□ 0.78
COL9A1P20849 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL9A1P20849 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL9A1P20849 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
COL9A1P20849 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms