Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCANP13611 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCANP13611 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VCANP13611 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.08■□□□□ 0.81
VCANP13611 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.08■□□□□ 0.81
VCANP13611 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCANP13611 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.08■□□□□ 0.81
VCANP13611 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
VCANP13611 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
VCANP13611 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
VCANP13611 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VCANP13611 RASA4DP-201ENST00000460726 1199 ntBASIC20.08■□□□□ 0.8
VCANP13611 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.08■□□□□ 0.8
VCANP13611 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.08■□□□□ 0.8
VCANP13611 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VCANP13611 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VCANP13611 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.08■□□□□ 0.8
VCANP13611 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VCANP13611 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
VCANP13611 AF238378.1-201ENST00000526806 358 ntBASIC20.08■□□□□ 0.8
VCANP13611 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VCANP13611 EP400NL-214ENST00000641289 2402 ntBASIC20.08■□□□□ 0.8
VCANP13611 AC242852.2-201ENST00000615738 1807 ntBASIC20.07■□□□□ 0.8
VCANP13611 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.07■□□□□ 0.8
VCANP13611 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VCANP13611 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.07■□□□□ 0.8
VCANP13611 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.07■□□□□ 0.8
VCANP13611 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
VCANP13611 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.07■□□□□ 0.8
VCANP13611 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 AC116351.2-201ENST00000606540 1585 ntBASIC20.07■□□□□ 0.8
VCANP13611 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.07■□□□□ 0.8
VCANP13611 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCANP13611 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
VCANP13611 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.07■□□□□ 0.8
VCANP13611 KRT18P67-201ENST00000432816 1264 ntBASIC20.06■□□□□ 0.8
VCANP13611 AC134684.3-201ENST00000641758 218 ntBASIC20.06■□□□□ 0.8
VCANP13611 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
VCANP13611 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
VCANP13611 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.06■□□□□ 0.8
VCANP13611 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.06■□□□□ 0.8
VCANP13611 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCANP13611 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCANP13611 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.05■□□□□ 0.8
VCANP13611 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
VCANP13611 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.05■□□□□ 0.8
VCANP13611 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCANP13611 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
VCANP13611 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.05■□□□□ 0.8
VCANP13611 HLA-A-209ENST00000638375 975 ntBASIC20.05■□□□□ 0.8
VCANP13611 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
VCANP13611 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
VCANP13611 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCANP13611 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCANP13611 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCANP13611 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.05■□□□□ 0.8
VCANP13611 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.05■□□□□ 0.8
VCANP13611 AC005229.4-201ENST00000610085 2198 ntBASIC20.05■□□□□ 0.8
VCANP13611 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCANP13611 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.05■□□□□ 0.8
VCANP13611 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VCANP13611 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.04■□□□□ 0.8
VCANP13611 CA15P1-201ENST00000481698 905 ntBASIC20.04■□□□□ 0.8
VCANP13611 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.04■□□□□ 0.8
VCANP13611 AC073648.2-201ENST00000510116 352 ntBASIC20.04■□□□□ 0.8
VCANP13611 AC138894.3-201ENST00000603787 634 ntBASIC20.04■□□□□ 0.8
VCANP13611 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
VCANP13611 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.04■□□□□ 0.8
VCANP13611 AL031284.1-201ENST00000419297 478 ntBASIC20.04■□□□□ 0.8
VCANP13611 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.04■□□□□ 0.8
VCANP13611 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.04■□□□□ 0.8
VCANP13611 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.04■□□□□ 0.8
VCANP13611 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VCANP13611 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
VCANP13611 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms