Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.22■□□□□ 0.51
CLPTM1O96005 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.22■□□□□ 0.51
CLPTM1O96005 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLPTM1O96005 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.22■□□□□ 0.51
CLPTM1O96005 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.22■□□□□ 0.51
CLPTM1O96005 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.22■□□□□ 0.51
CLPTM1O96005 IKBKGP1-201ENST00000612193 1073 ntBASIC18.22■□□□□ 0.51
CLPTM1O96005 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLPTM1O96005 AC067852.2-201ENST00000590513 2313 ntBASIC18.22■□□□□ 0.51
CLPTM1O96005 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.22■□□□□ 0.51
CLPTM1O96005 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.22■□□□□ 0.51
CLPTM1O96005 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.22■□□□□ 0.51
CLPTM1O96005 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.22■□□□□ 0.51
CLPTM1O96005 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLPTM1O96005 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.21■□□□□ 0.51
CLPTM1O96005 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.21■□□□□ 0.51
CLPTM1O96005 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CLPTM1O96005 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.21■□□□□ 0.51
CLPTM1O96005 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.21■□□□□ 0.51
CLPTM1O96005 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.21■□□□□ 0.51
CLPTM1O96005 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.21■□□□□ 0.51
CLPTM1O96005 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
CLPTM1O96005 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CLPTM1O96005 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.21■□□□□ 0.51
CLPTM1O96005 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLPTM1O96005 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.21■□□□□ 0.5
CLPTM1O96005 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.2■□□□□ 0.5
CLPTM1O96005 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.2■□□□□ 0.5
CLPTM1O96005 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CLPTM1O96005 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
CLPTM1O96005 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.2■□□□□ 0.5
CLPTM1O96005 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLPTM1O96005 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 MKRN4P-201ENST00000444706 1521 ntBASIC18.19■□□□□ 0.5
CLPTM1O96005 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.19■□□□□ 0.5
CLPTM1O96005 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CLPTM1O96005 KRT19P1-201ENST00000405746 1186 ntBASIC18.19■□□□□ 0.5
CLPTM1O96005 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.19■□□□□ 0.5
CLPTM1O96005 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.19■□□□□ 0.5
CLPTM1O96005 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.19■□□□□ 0.5
CLPTM1O96005 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CLPTM1O96005 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.19■□□□□ 0.5
CLPTM1O96005 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CLPTM1O96005 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.19■□□□□ 0.5
CLPTM1O96005 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CLPTM1O96005 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLPTM1O96005 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CLPTM1O96005 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.18■□□□□ 0.5
CLPTM1O96005 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLPTM1O96005 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
CLPTM1O96005 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLPTM1O96005 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.18■□□□□ 0.5
CLPTM1O96005 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLPTM1O96005 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CLPTM1O96005 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLPTM1O96005 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLPTM1O96005 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms