Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SEMA3DO95025 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.52■□□□□ 0.56
SEMA3DO95025 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 ESRRAP1-201ENST00000400596 1257 ntBASIC18.52■□□□□ 0.56
SEMA3DO95025 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.52■□□□□ 0.56
SEMA3DO95025 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.52■□□□□ 0.56
SEMA3DO95025 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SEMA3DO95025 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.52■□□□□ 0.55
SEMA3DO95025 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.52■□□□□ 0.55
SEMA3DO95025 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SEMA3DO95025 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
SEMA3DO95025 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.52■□□□□ 0.55
SEMA3DO95025 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
SEMA3DO95025 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
SEMA3DO95025 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.51■□□□□ 0.55
SEMA3DO95025 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
SEMA3DO95025 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.51■□□□□ 0.55
SEMA3DO95025 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.51■□□□□ 0.55
SEMA3DO95025 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.51■□□□□ 0.55
SEMA3DO95025 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SEMA3DO95025 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.51■□□□□ 0.55
SEMA3DO95025 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SEMA3DO95025 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.5■□□□□ 0.55
SEMA3DO95025 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
SEMA3DO95025 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SEMA3DO95025 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SEMA3DO95025 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SEMA3DO95025 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.5■□□□□ 0.55
SEMA3DO95025 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.5■□□□□ 0.55
SEMA3DO95025 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SEMA3DO95025 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.5■□□□□ 0.55
SEMA3DO95025 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.5■□□□□ 0.55
SEMA3DO95025 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.5■□□□□ 0.55
SEMA3DO95025 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SEMA3DO95025 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.5■□□□□ 0.55
SEMA3DO95025 AC004264.1-201ENST00000608354 794 ntBASIC18.5■□□□□ 0.55
SEMA3DO95025 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.5■□□□□ 0.55
SEMA3DO95025 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SEMA3DO95025 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
SEMA3DO95025 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SEMA3DO95025 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SEMA3DO95025 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.5■□□□□ 0.55
SEMA3DO95025 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SEMA3DO95025 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SEMA3DO95025 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SEMA3DO95025 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
SEMA3DO95025 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SEMA3DO95025 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SEMA3DO95025 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.49■□□□□ 0.55
SEMA3DO95025 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 CD99P1-205ENST00000527459 561 ntBASIC18.49■□□□□ 0.55
SEMA3DO95025 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.49■□□□□ 0.55
SEMA3DO95025 AC233263.1-201ENST00000578059 224 ntBASIC18.49■□□□□ 0.55
SEMA3DO95025 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SEMA3DO95025 AC104417.2-201ENST00000562989 1793 ntBASIC18.49■□□□□ 0.55
SEMA3DO95025 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SEMA3DO95025 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SEMA3DO95025 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SEMA3DO95025 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SEMA3DO95025 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.49■□□□□ 0.55
SEMA3DO95025 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SEMA3DO95025 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SEMA3DO95025 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms