Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDC3O75056 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SDC3O75056 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.92■□□□□ 0.62
SDC3O75056 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.91■□□□□ 0.62
SDC3O75056 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.91■□□□□ 0.62
SDC3O75056 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.91■□□□□ 0.62
SDC3O75056 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.91■□□□□ 0.62
SDC3O75056 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.91■□□□□ 0.62
SDC3O75056 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SDC3O75056 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
SDC3O75056 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.91■□□□□ 0.62
SDC3O75056 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.91■□□□□ 0.62
SDC3O75056 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.91■□□□□ 0.62
SDC3O75056 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.91■□□□□ 0.62
SDC3O75056 AL023803.3-201ENST00000615559 522 ntBASIC18.91■□□□□ 0.62
SDC3O75056 AC141257.4-201ENST00000634557 245 ntBASIC18.91■□□□□ 0.62
SDC3O75056 AC136944.6-201ENST00000634818 245 ntBASIC18.91■□□□□ 0.62
SDC3O75056 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SDC3O75056 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDC3O75056 RNF165-205ENST00000588679 2904 ntBASIC18.9■□□□□ 0.62
SDC3O75056 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SDC3O75056 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SDC3O75056 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SDC3O75056 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 UPK3BP1-201ENST00000428678 509 ntBASIC18.9■□□□□ 0.62
SDC3O75056 TSPY17P-201ENST00000450329 467 ntBASIC18.9■□□□□ 0.62
SDC3O75056 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.9■□□□□ 0.62
SDC3O75056 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.9■□□□□ 0.62
SDC3O75056 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.9■□□□□ 0.62
SDC3O75056 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.9■□□□□ 0.62
SDC3O75056 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SDC3O75056 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDC3O75056 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.9■□□□□ 0.62
SDC3O75056 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.89■□□□□ 0.62
SDC3O75056 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.62
SDC3O75056 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.89■□□□□ 0.62
SDC3O75056 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SDC3O75056 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.89■□□□□ 0.61
SDC3O75056 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.89■□□□□ 0.61
SDC3O75056 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.89■□□□□ 0.61
SDC3O75056 TSPY5P-201ENST00000426936 936 ntBASIC18.89■□□□□ 0.61
SDC3O75056 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.89■□□□□ 0.61
SDC3O75056 AL353719.1-201ENST00000566847 864 ntBASIC18.89■□□□□ 0.61
SDC3O75056 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.89■□□□□ 0.61
SDC3O75056 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.89■□□□□ 0.61
SDC3O75056 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
SDC3O75056 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SDC3O75056 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC3O75056 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
SDC3O75056 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SDC3O75056 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.89■□□□□ 0.61
SDC3O75056 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC3O75056 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDC3O75056 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SDC3O75056 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SDC3O75056 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC3O75056 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC3O75056 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.88■□□□□ 0.61
SDC3O75056 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.88■□□□□ 0.61
SDC3O75056 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SDC3O75056 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SDC3O75056 AC011558.1-201ENST00000623459 338 ntBASIC18.88■□□□□ 0.61
SDC3O75056 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC3O75056 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC3O75056 KRT8P41-201ENST00000533985 1514 ntBASIC18.88■□□□□ 0.61
SDC3O75056 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.88■□□□□ 0.61
SDC3O75056 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms