Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.78■■□□□ 1.08
CHMP2AO43633 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.78■■□□□ 1.08
CHMP2AO43633 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 MIR6786-201ENST00000616843 113 ntBASIC21.78■■□□□ 1.08
CHMP2AO43633 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CHMP2AO43633 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CHMP2AO43633 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.78■■□□□ 1.08
CHMP2AO43633 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CHMP2AO43633 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.78■■□□□ 1.08
CHMP2AO43633 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
CHMP2AO43633 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CHMP2AO43633 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP2AO43633 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.78■■□□□ 1.08
CHMP2AO43633 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.77■■□□□ 1.08
CHMP2AO43633 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.77■■□□□ 1.08
CHMP2AO43633 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP2AO43633 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CHMP2AO43633 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP2AO43633 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CHMP2AO43633 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP2AO43633 MESTP1-201ENST00000404287 994 ntBASIC21.77■■□□□ 1.08
CHMP2AO43633 RBM17P1-201ENST00000453646 1190 ntBASIC21.77■■□□□ 1.08
CHMP2AO43633 AC011506.1-201ENST00000474329 610 ntBASIC21.77■■□□□ 1.08
CHMP2AO43633 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP2AO43633 BX088651.1-201ENST00000540551 451 ntBASIC21.77■■□□□ 1.08
CHMP2AO43633 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.77■■□□□ 1.08
CHMP2AO43633 AL160286.2-201ENST00000567150 934 ntBASIC21.77■■□□□ 1.08
CHMP2AO43633 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.77■■□□□ 1.08
CHMP2AO43633 AP000525.1-201ENST00000608286 694 ntBASIC21.77■■□□□ 1.08
CHMP2AO43633 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP2AO43633 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.77■■□□□ 1.08
CHMP2AO43633 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.77■■□□□ 1.08
CHMP2AO43633 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP2AO43633 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CHMP2AO43633 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CHMP2AO43633 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.76■■□□□ 1.07
CHMP2AO43633 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 B3GAT3P1-201ENST00000471720 806 ntBASIC21.76■■□□□ 1.07
CHMP2AO43633 AC026271.3-201ENST00000571884 352 ntBASIC21.76■■□□□ 1.07
CHMP2AO43633 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.76■■□□□ 1.07
CHMP2AO43633 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
CHMP2AO43633 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP2AO43633 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.76■■□□□ 1.07
CHMP2AO43633 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.76■■□□□ 1.07
CHMP2AO43633 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CHMP2AO43633 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CHMP2AO43633 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 RCC2P6-201ENST00000526625 1557 ntBASIC21.75■■□□□ 1.07
CHMP2AO43633 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.75■■□□□ 1.07
CHMP2AO43633 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CHMP2AO43633 Z85996.1-201ENST00000494644 937 ntBASIC21.75■■□□□ 1.07
CHMP2AO43633 AC116562.2-201ENST00000507042 360 ntBASIC21.75■■□□□ 1.07
CHMP2AO43633 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.75■■□□□ 1.07
CHMP2AO43633 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.75■■□□□ 1.07
CHMP2AO43633 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CHMP2AO43633 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP2AO43633 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.75■■□□□ 1.07
CHMP2AO43633 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.74■■□□□ 1.07
CHMP2AO43633 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.74■■□□□ 1.07
CHMP2AO43633 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
CHMP2AO43633 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.74■■□□□ 1.07
CHMP2AO43633 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.74■■□□□ 1.07
CHMP2AO43633 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms