Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CLDN3O15551 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.16■□□□□ 0.98
CLDN3O15551 LINC01465-201ENST00000408887 1940 ntBASIC21.16■□□□□ 0.98
CLDN3O15551 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.15■□□□□ 0.98
CLDN3O15551 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CLDN3O15551 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.15■□□□□ 0.98
CLDN3O15551 AL160286.2-201ENST00000567150 934 ntBASIC21.15■□□□□ 0.98
CLDN3O15551 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.15■□□□□ 0.98
CLDN3O15551 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.15■□□□□ 0.98
CLDN3O15551 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CLDN3O15551 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLDN3O15551 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CLDN3O15551 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.14■□□□□ 0.98
CLDN3O15551 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLDN3O15551 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.14■□□□□ 0.98
CLDN3O15551 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.14■□□□□ 0.98
CLDN3O15551 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.14■□□□□ 0.98
CLDN3O15551 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLDN3O15551 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.14■□□□□ 0.98
CLDN3O15551 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.14■□□□□ 0.98
CLDN3O15551 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.14■□□□□ 0.97
CLDN3O15551 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.14■□□□□ 0.97
CLDN3O15551 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.14■□□□□ 0.97
CLDN3O15551 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLDN3O15551 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLDN3O15551 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLDN3O15551 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLDN3O15551 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLDN3O15551 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLDN3O15551 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLDN3O15551 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLDN3O15551 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.13■□□□□ 0.97
CLDN3O15551 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.13■□□□□ 0.97
CLDN3O15551 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.13■□□□□ 0.97
CLDN3O15551 AC116562.2-201ENST00000507042 360 ntBASIC21.13■□□□□ 0.97
CLDN3O15551 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.13■□□□□ 0.97
CLDN3O15551 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.13■□□□□ 0.97
CLDN3O15551 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.13■□□□□ 0.97
CLDN3O15551 REXO1L10P-201ENST00000615707 1290 ntBASIC21.13■□□□□ 0.97
CLDN3O15551 REXO1L12P-201ENST00000622156 912 ntBASIC21.13■□□□□ 0.97
CLDN3O15551 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLDN3O15551 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.13■□□□□ 0.97
CLDN3O15551 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLDN3O15551 FSCN1P1-201ENST00000568912 1481 ntBASIC21.13■□□□□ 0.97
CLDN3O15551 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.13■□□□□ 0.97
CLDN3O15551 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.12■□□□□ 0.97
CLDN3O15551 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.12■□□□□ 0.97
CLDN3O15551 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.12■□□□□ 0.97
CLDN3O15551 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.12■□□□□ 0.97
CLDN3O15551 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CLDN3O15551 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.12■□□□□ 0.97
CLDN3O15551 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.12■□□□□ 0.97
CLDN3O15551 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.12■□□□□ 0.97
CLDN3O15551 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CLDN3O15551 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.12■□□□□ 0.97
CLDN3O15551 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLDN3O15551 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms