Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH4O15457 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH4O15457 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.07
MSH4O15457 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH4O15457 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.76■■□□□ 1.07
MSH4O15457 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
MSH4O15457 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.76■■□□□ 1.07
MSH4O15457 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
MSH4O15457 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
MSH4O15457 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH4O15457 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.76■■□□□ 1.07
MSH4O15457 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH4O15457 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
MSH4O15457 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.75■■□□□ 1.07
MSH4O15457 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH4O15457 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MSH4O15457 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH4O15457 AL390955.1-201ENST00000428694 934 ntBASIC21.75■■□□□ 1.07
MSH4O15457 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH4O15457 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH4O15457 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.75■■□□□ 1.07
MSH4O15457 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MSH4O15457 AP000692.2-201ENST00000608391 879 ntBASIC21.75■■□□□ 1.07
MSH4O15457 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.75■■□□□ 1.07
MSH4O15457 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.75■■□□□ 1.07
MSH4O15457 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH4O15457 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH4O15457 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.75■■□□□ 1.07
MSH4O15457 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH4O15457 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.74■■□□□ 1.07
MSH4O15457 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH4O15457 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
MSH4O15457 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.74■■□□□ 1.07
MSH4O15457 DGCR10-201ENST00000609839 495 ntBASIC21.74■■□□□ 1.07
MSH4O15457 AC073912.3-201ENST00000624414 853 ntBASIC21.74■■□□□ 1.07
MSH4O15457 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH4O15457 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH4O15457 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH4O15457 KRT8P9-201ENST00000558927 1449 ntBASIC21.73■■□□□ 1.07
MSH4O15457 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.73■■□□□ 1.07
MSH4O15457 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.73■■□□□ 1.07
MSH4O15457 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH4O15457 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH4O15457 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
MSH4O15457 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
MSH4O15457 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH4O15457 FAM207BP-201ENST00000447172 505 ntBASIC21.73■■□□□ 1.07
MSH4O15457 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.73■■□□□ 1.07
MSH4O15457 FITM1-202ENST00000559294 800 ntBASIC21.73■■□□□ 1.07
MSH4O15457 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
MSH4O15457 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
MSH4O15457 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.73■■□□□ 1.07
MSH4O15457 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.73■■□□□ 1.07
MSH4O15457 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH4O15457 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH4O15457 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH4O15457 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH4O15457 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
MSH4O15457 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH4O15457 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
MSH4O15457 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 MIR1238-201ENST00000408483 83 ntBASIC21.72■■□□□ 1.07
MSH4O15457 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH4O15457 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH4O15457 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH4O15457 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms