Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 BX323043.1-201ENST00000641006 1765 ntBASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 ARMC10P1-201ENST00000313754 855 ntBASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC113347.1-201ENST00000413321 391 ntBASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC026271.3-201ENST00000571884 352 ntBASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AL445228.2-201ENST00000605589 952 ntBASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 AP006587.1-201ENST00000534129 1502 ntBASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 NEFHP1-201ENST00000412845 2629 ntBASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TMX2-CTNND1H3BSU7 FSCN1P1-201ENST00000568912 1481 ntBASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 AL137013.1-201ENST00000432946 1228 ntBASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TMX2-CTNND1H3BSU7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms