Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 HCG11-201ENST00000411553 5696 ntBASIC15.26■□□□□ 0.03
TRAV41A0A0B4J266 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 KSR1P1-201ENST00000446298 240 ntBASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 DET1-205ENST00000558413 583 ntTSL 4 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 ANKRD18DP-204ENST00000455355 1975 ntBASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV41A0A0B4J266 AL158211.5-201ENST00000623583 2518 ntBASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 AC233702.5-201ENST00000584107 538 ntBASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 HLA-A-209ENST00000638375 975 ntBASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV41A0A0B4J266 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 RPS2P4-201ENST00000476944 856 ntBASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 Z99916.2-201ENST00000604037 246 ntBASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 AL445675.2-201ENST00000620291 557 ntBASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 AC131212.4-201ENST00000623606 975 ntBASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 CR392000.1-201ENST00000624770 1228 ntBASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 KRT16P1-201ENST00000399124 1418 ntBASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 ZNF815P-204ENST00000434898 1737 ntBASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV41A0A0B4J266 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms