Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC090116.1-201ENST00000615679 446 ntBASIC4.42□□□□□ -1.7
CLIP4Q8N3C7 STMN1P1-201ENST00000617809 440 ntBASIC4.42□□□□□ -1.7
CLIP4Q8N3C7 AC098679.4-201ENST00000624241 654 ntBASIC4.42□□□□□ -1.7
CLIP4Q8N3C7 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.42□□□□□ -1.7
CLIP4Q8N3C7 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.42□□□□□ -1.7
CLIP4Q8N3C7 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
CLIP4Q8N3C7 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 snoZ40.1-201ENST00000364540 72 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 Y_RNA.465-201ENST00000384293 102 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 RNU5A-2P-201ENST00000384337 116 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 CHEK2P3-201ENST00000416118 248 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 LINC00993-201ENST00000420453 540 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 HMGB3P9-201ENST00000441799 583 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 MTND5P2-201ENST00000442927 1142 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 ARL5AP2-201ENST00000444698 533 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 HMGB1P48-201ENST00000446155 598 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 ZNF736P5Y-201ENST00000451173 805 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 RPL7AP52-201ENST00000458096 790 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 snoU13.20-201ENST00000459180 104 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC091959.2-201ENST00000477363 321 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 MTND1P22-201ENST00000510572 951 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 OR5BM1P-201ENST00000512021 366 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC108471.1-201ENST00000513977 287 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC117532.1-201ENST00000514638 323 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 PTK2-220ENST00000520151 573 ntTSL 4 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 REXO2-218ENST00000544827 880 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC010198.2-201ENST00000550612 259 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 NBEAP1-201ENST00000554452 979 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 NDUFAF4P1-201ENST00000559425 519 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AADACP1-206ENST00000561502 1193 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 MIR548Y-201ENST00000582739 110 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 MAPK10-303ENST00000641324 3959 ntBASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP4Q8N3C7 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLIP4Q8N3C7 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.4□□□□□ -1.7
CLIP4Q8N3C7 AC027228.2-201ENST00000567141 2154 ntBASIC4.4□□□□□ -1.7
CLIP4Q8N3C7 GTF2H2B-203ENST00000508065 1432 ntBASIC4.4□□□□□ -1.7
CLIP4Q8N3C7 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLIP4Q8N3C7 OR52B1P-201ENST00000316506 909 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 RNA5SP123-201ENST00000363244 119 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 Y_RNA.436-201ENST00000384097 102 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 MIR525-201ENST00000384978 85 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 LAP3P1-201ENST00000403648 294 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 AC004448.2-201ENST00000422360 586 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 RPL7P57-201ENST00000423238 740 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 RPP40P1-201ENST00000426762 456 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 AC234064.1-201ENST00000436312 247 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 AC118469.1-201ENST00000442943 488 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 MTND2P4-201ENST00000445034 1004 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 MTND2P28-201ENST00000457540 1044 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 RNU7-125P-201ENST00000458760 62 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 RNU7-27P-201ENST00000459281 62 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 RPL7P48-201ENST00000461513 746 ntBASIC4.4□□□□□ -1.71
CLIP4Q8N3C7 RAP1BP2-201ENST00000478270 544 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms