RNA–Protein interactions for RNA: ENST00000441799.1

HMGB3P9-201, Transcript of high mobility group box 3 pseudogene 9, humanhuman

BASIC

Gene HMGB3P9, Length 583 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P9-201ENST00000441799 AEBP2Q6ZN18 517 aaPredicted RBP23.19■■□□□ 1.3
HMGB3P9-201ENST00000441799 CHIC1Q5VXU3 224 aa21.9■■□□□ 1.1
HMGB3P9-201ENST00000441799 SENP3Q9H4L4 574 aaPredicted RBP19.68■□□□□ 0.74
HMGB3P9-201ENST00000441799 PHF23Q9BUL5 403 aaPredicted RBP19.48■□□□□ 0.71
HMGB3P9-201ENST00000441799 FOXD1Q16676 465 aa18.43■□□□□ 0.54
HMGB3P9-201ENST00000441799 PLPPR3Q6T4P5 718 aa17.41■□□□□ 0.38
HMGB3P9-201ENST00000441799 PPP6R1Q9UPN7 881 aa17.23■□□□□ 0.35
HMGB3P9-201ENST00000441799 MSH5O43196 834 aa17.18■□□□□ 0.34
HMGB3P9-201ENST00000441799 ADRA2BP18089 450 aa17.13■□□□□ 0.33
HMGB3P9-201ENST00000441799 PIAS4Q8N2W9 510 aaPredicted RBP17.13■□□□□ 0.33
HMGB3P9-201ENST00000441799 POTEDQ86YR6 584 aa16.97■□□□□ 0.31
HMGB3P9-201ENST00000441799 MAPK8IP2Q13387 824 aaPredicted RBP15.79■□□□□ 0.12
HMGB3P9-201ENST00000441799 DMRT2Q9Y5R5 561 aa15.64■□□□□ 0.09
HMGB3P9-201ENST00000441799 SCAF1Q9H7N4 1312 aaKnown RBP15.56■□□□□ 0.08
HMGB3P9-201ENST00000441799 PPP4R3CPQ6ZMV5 832 aa15.29■□□□□ 0.04
HMGB3P9-201ENST00000441799 HOXD11P31277 338 aaPredicted RBP15.04■□□□□ -0
HMGB3P9-201ENST00000441799 CNKSR2Q8WXI2 1034 aa14.99□□□□□ -0.01
HMGB3P9-201ENST00000441799 DCAF8L1A6NGE4 600 aa14.94□□□□□ -0.02
HMGB3P9-201ENST00000441799 RNF216Q9NWF9 866 aaPredicted RBP14.88□□□□□ -0.03
HMGB3P9-201ENST00000441799 CACNB1Q02641 598 aaPredicted RBP14.8□□□□□ -0.04
HMGB3P9-201ENST00000441799 RNF39Q9H2S5 420 aa14.71□□□□□ -0.05
HMGB3P9-201ENST00000441799 NCBP3Q53F19 620 aaKnown RBP14.61□□□□□ -0.07
HMGB3P9-201ENST00000441799 DNAJC5BQ9UF47 199 aa14.5□□□□□ -0.09
HMGB3P9-201ENST00000441799 NPM3O75607 178 aaKnown RBP14.48□□□□□ -0.09
HMGB3P9-201ENST00000441799 C1QBPQ07021 282 aaKnown RBP14.46□□□□□ -0.09
HMGB3P9-201ENST00000441799 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.28□□□□□ -0.12
HMGB3P9-201ENST00000441799 KCNA4P22459 653 aa14.16□□□□□ -0.14
HMGB3P9-201ENST00000441799 U3KPZ7 1027 aaPredicted RBP14.03□□□□□ -0.16
HMGB3P9-201ENST00000441799 SLC4A2P04920 1241 aa13.89□□□□□ -0.19
HMGB3P9-201ENST00000441799 SPINK5Q9NQ38 1064 aaPredicted RBP13.86□□□□□ -0.19
HMGB3P9-201ENST00000441799 CAPN15O75808 1086 aa13.77□□□□□ -0.21
HMGB3P9-201ENST00000441799 DSG3P32926 999 aa13.76□□□□□ -0.21
HMGB3P9-201ENST00000441799 TRHP20396 242 aaPredicted RBP13.54□□□□□ -0.24
HMGB3P9-201ENST00000441799 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.49□□□□□ -0.25
HMGB3P9-201ENST00000441799 APLP2Q06481 763 aa13.49□□□□□ -0.25
HMGB3P9-201ENST00000441799 HNRNPUL2Q1KMD3 747 aaKnown RBP13.49□□□□□ -0.25
HMGB3P9-201ENST00000441799 ABCB7O75027 752 aa13.48□□□□□ -0.25
HMGB3P9-201ENST00000441799 ZNF219Q9P2Y4 722 aaPredicted RBP13.47□□□□□ -0.25
HMGB3P9-201ENST00000441799 SAMD1Q6SPF0 538 aaPredicted RBP13.44□□□□□ -0.26
HMGB3P9-201ENST00000441799 MYCNP04198 464 aaPredicted RBP13.34□□□□□ -0.27
HMGB3P9-201ENST00000441799 SLC4A1APQ9BWU0 796 aaKnown RBP13.3□□□□□ -0.28
HMGB3P9-201ENST00000441799 POTEHQ6S545 545 aa13.25□□□□□ -0.29
HMGB3P9-201ENST00000441799 POLA2Q14181 598 aa13.19□□□□□ -0.3
HMGB3P9-201ENST00000441799 FOXD4L1Q9NU39 408 aa13.17□□□□□ -0.3
HMGB3P9-201ENST00000441799 ATF5Q9Y2D1 282 aaPredicted RBP13.14□□□□□ -0.31
HMGB3P9-201ENST00000441799 ZBTB22O15209 634 aa13.06□□□□□ -0.32
HMGB3P9-201ENST00000441799 RBM42Q9BTD8 480 aaKnown RBP13.03□□□□□ -0.32
HMGB3P9-201ENST00000441799 CHRDL2Q6WN34 429 aa12.84□□□□□ -0.35
HMGB3P9-201ENST00000441799 ZBTB12Q9Y330 459 aaPredicted RBP12.83□□□□□ -0.36
HMGB3P9-201ENST00000441799 ATXN8OSP0DMR3 200 aa12.78□□□□□ -0.36
HMGB3P9-201ENST00000441799 AKT1S1Q96B36 256 aa12.77□□□□□ -0.37
HMGB3P9-201ENST00000441799 OSCARQ8IYS5 282 aa12.75□□□□□ -0.37
HMGB3P9-201ENST00000441799 REM2Q8IYK8 340 aaPredicted RBP12.69□□□□□ -0.38
HMGB3P9-201ENST00000441799 PITPNM1O00562 1244 aa12.55□□□□□ -0.4
HMGB3P9-201ENST00000441799 PIP4P2Q8N4L2 257 aa12.55□□□□□ -0.4
HMGB3P9-201ENST00000441799 MKRN4PQ13434 485 aaPredicted RBP12.53□□□□□ -0.4
HMGB3P9-201ENST00000441799 FBLN2P98095 1184 aa12.5□□□□□ -0.41
HMGB3P9-201ENST00000441799 SPDYE2BA6NHP3 402 aa12.48□□□□□ -0.41
HMGB3P9-201ENST00000441799 SPDYE6P0CI01 402 aa12.48□□□□□ -0.41
HMGB3P9-201ENST00000441799 SPDYE2Q495Y8 402 aa12.48□□□□□ -0.41
HMGB3P9-201ENST00000441799 FXR2P51116 673 aaKnown RBP eCLIP12.47□□□□□ -0.41
HMGB3P9-201ENST00000441799 SP7Q8TDD2 431 aaPredicted RBP12.38□□□□□ -0.43
HMGB3P9-201ENST00000441799 CSRNP3Q8WYN3 585 aa12.38□□□□□ -0.43
HMGB3P9-201ENST00000441799 SSUH2Q9Y2M2 353 aa12.34□□□□□ -0.43
HMGB3P9-201ENST00000441799 ZNF692Q9BU19 519 aaPredicted RBP12.33□□□□□ -0.44
HMGB3P9-201ENST00000441799 HAX1O00165 279 aa12.3□□□□□ -0.44
HMGB3P9-201ENST00000441799 SPDYE1Q8NFV5 336 aaPredicted RBP12.26□□□□□ -0.45
HMGB3P9-201ENST00000441799 EVX2Q03828 476 aa12.25□□□□□ -0.45
HMGB3P9-201ENST00000441799 CLEC11AQ9Y240 323 aa12.25□□□□□ -0.45
HMGB3P9-201ENST00000441799 PRKAR2AP13861 404 aaKnown RBP12.21□□□□□ -0.45
HMGB3P9-201ENST00000441799 PABPN1Q86U42 306 aaKnown RBP eCLIP12.15□□□□□ -0.46
HMGB3P9-201ENST00000441799 EHMT2Q96KQ7 1210 aa12.1□□□□□ -0.47
HMGB3P9-201ENST00000441799 CHADLQ6NUI6 762 aa12.08□□□□□ -0.48
HMGB3P9-201ENST00000441799 C19orf67A6NJJ6 358 aa12.06□□□□□ -0.48
HMGB3P9-201ENST00000441799 PRR29P0C7W0 189 aa12.04□□□□□ -0.48
HMGB3P9-201ENST00000441799 GABBR2O75899 941 aa11.91□□□□□ -0.5
HMGB3P9-201ENST00000441799 FARP1Q9Y4F1 1045 aaPredicted RBP11.88□□□□□ -0.51
HMGB3P9-201ENST00000441799 SPDYE4A6NLX3 237 aa11.83□□□□□ -0.52
HMGB3P9-201ENST00000441799 CD44P16070 742 aaKnown RBP11.8□□□□□ -0.52
HMGB3P9-201ENST00000441799 CREBZFQ9NS37 354 aa11.79□□□□□ -0.52
HMGB3P9-201ENST00000441799 STAG3Q9UJ98 1225 aa11.75□□□□□ -0.53
HMGB3P9-201ENST00000441799 POTEIP0CG38 1075 aa11.7□□□□□ -0.54
HMGB3P9-201ENST00000441799 ZRANB1Q9UGI0 708 aa11.63□□□□□ -0.55
HMGB3P9-201ENST00000441799 LHX8Q68G74 356 aa11.62□□□□□ -0.55
HMGB3P9-201ENST00000441799 ZNF579Q8NAF0 562 aaKnown RBP11.62□□□□□ -0.55
HMGB3P9-201ENST00000441799 MNX1P50219 401 aaPredicted RBP11.61□□□□□ -0.55
HMGB3P9-201ENST00000441799 CLCN6P51797 869 aa11.6□□□□□ -0.55
HMGB3P9-201ENST00000441799 PROM2Q8N271 834 aa11.58□□□□□ -0.56
HMGB3P9-201ENST00000441799 GALR2O43603 387 aaPredicted RBP11.52□□□□□ -0.57
HMGB3P9-201ENST00000441799 DCBLD2Q96PD2 775 aa11.5□□□□□ -0.57
HMGB3P9-201ENST00000441799 PHF12Q96QT6 1004 aa11.49□□□□□ -0.57
HMGB3P9-201ENST00000441799 NPM1P06748 294 aaKnown RBP eCLIP11.48□□□□□ -0.57
HMGB3P9-201ENST00000441799 PAK3O75914 559 aaPredicted RBP11.44□□□□□ -0.58
HMGB3P9-201ENST00000441799 PELP1Q8IZL8 1130 aaKnown RBP11.35□□□□□ -0.59
HMGB3P9-201ENST00000441799 POTEB2H3BUK9 544 aa11.33□□□□□ -0.6
HMGB3P9-201ENST00000441799 MS4A3Q96HJ5 214 aa11.32□□□□□ -0.6
HMGB3P9-201ENST00000441799 TSPYL2Q9H2G4 693 aaPredicted RBP11.32□□□□□ -0.6
HMGB3P9-201ENST00000441799 CCDC61Q9Y6R9 512 aa11.3□□□□□ -0.6
HMGB3P9-201ENST00000441799 MIER1Q8N108 512 aa11.29□□□□□ -0.6
HMGB3P9-201ENST00000441799 ASTLQ6HA08 431 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms