Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC2.57□□□□□ -2
PRKDCP78527 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC2.57□□□□□ -2
PRKDCP78527 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC2.57□□□□□ -2
PRKDCP78527 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC2.57□□□□□ -2
PRKDCP78527 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PRKDCP78527 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
PRKDCP78527 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
PRKDCP78527 AC083837.1-201ENST00000565297 2994 ntBASIC2.57□□□□□ -2
PRKDCP78527 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
PRKDCP78527 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PRKDCP78527 MIR1271-201ENST00000408537 86 ntBASIC2.57□□□□□ -2
PRKDCP78527 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC2.57□□□□□ -2
PRKDCP78527 RPL31P61-201ENST00000496160 376 ntBASIC2.57□□□□□ -2
PRKDCP78527 RNU4-29P-201ENST00000515943 174 ntBASIC2.57□□□□□ -2
PRKDCP78527 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC2.57□□□□□ -2
PRKDCP78527 AC231759.1-201ENST00000616455 597 ntBASIC2.57□□□□□ -2
PRKDCP78527 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC2.57□□□□□ -2
PRKDCP78527 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 AC073073.2-201ENST00000609827 2578 ntBASIC2.56□□□□□ -2
PRKDCP78527 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.56□□□□□ -2
PRKDCP78527 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC2.56□□□□□ -2
PRKDCP78527 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC2.56□□□□□ -2
PRKDCP78527 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 AL096803.3-201ENST00000609032 532 ntBASIC2.56□□□□□ -2
PRKDCP78527 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.56□□□□□ -2
PRKDCP78527 AL645937.1-201ENST00000641739 1652 ntBASIC2.56□□□□□ -2
PRKDCP78527 AC138393.1-206ENST00000540997 1886 ntBASIC2.56□□□□□ -2
PRKDCP78527 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC2.56□□□□□ -2
PRKDCP78527 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 AL079342.1-201ENST00000401460 267 ntBASIC2.56□□□□□ -2
PRKDCP78527 MTHFD2P2-201ENST00000407725 247 ntBASIC2.56□□□□□ -2
PRKDCP78527 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC2.56□□□□□ -2
PRKDCP78527 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC2.56□□□□□ -2
PRKDCP78527 PDLIM1P4-201ENST00000504327 1006 ntBASIC2.56□□□□□ -2
PRKDCP78527 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.56□□□□□ -2
PRKDCP78527 AL732618.1-201ENST00000623251 301 ntBASIC2.56□□□□□ -2
PRKDCP78527 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 AP006437.1-201ENST00000641440 3685 ntBASIC2.56□□□□□ -2
PRKDCP78527 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 AC007336.1-201ENST00000576365 3828 ntBASIC2.56□□□□□ -2
PRKDCP78527 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.56□□□□□ -2
PRKDCP78527 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
PRKDCP78527 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PRKDCP78527 CD36-221ENST00000534394 1741 ntTSL 2 BASIC2.56□□□□□ -2
PRKDCP78527 RN7SKP53-201ENST00000411337 315 ntBASIC2.56□□□□□ -2
PRKDCP78527 TPT1P1-201ENST00000458495 518 ntBASIC2.56□□□□□ -2
PRKDCP78527 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.56□□□□□ -2
PRKDCP78527 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC2.56□□□□□ -2
PRKDCP78527 AC245100.7-201ENST00000609678 442 ntBASIC2.56□□□□□ -2
PRKDCP78527 AC139713.2-210ENST00000641741 992 ntBASIC2.56□□□□□ -2
PRKDCP78527 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC2.55□□□□□ -2
PRKDCP78527 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PRKDCP78527 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC2.55□□□□□ -2
PRKDCP78527 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC2.55□□□□□ -2
PRKDCP78527 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
PRKDCP78527 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.55□□□□□ -2
PRKDCP78527 NUP35P1-201ENST00000422734 947 ntBASIC2.55□□□□□ -2
PRKDCP78527 SKP1P3-201ENST00000429280 487 ntBASIC2.55□□□□□ -2
PRKDCP78527 SETP5-201ENST00000437270 562 ntBASIC2.55□□□□□ -2
PRKDCP78527 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.55□□□□□ -2
PRKDCP78527 RPL31P50-201ENST00000471002 296 ntBASIC2.55□□□□□ -2
PRKDCP78527 RPS3AP43-201ENST00000479743 781 ntBASIC2.55□□□□□ -2
PRKDCP78527 AL360157.1-201ENST00000565962 87 ntBASIC2.55□□□□□ -2
PRKDCP78527 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC2.55□□□□□ -2
PRKDCP78527 AC008966.2-201ENST00000606157 453 ntBASIC2.55□□□□□ -2
PRKDCP78527 AC097505.1-201ENST00000610199 565 ntBASIC2.55□□□□□ -2
PRKDCP78527 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC2.55□□□□□ -2
PRKDCP78527 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC2.55□□□□□ -2
PRKDCP78527 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
PRKDCP78527 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC2.55□□□□□ -2
PRKDCP78527 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC2.55□□□□□ -2
PRKDCP78527 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PRKDCP78527 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC2.55□□□□□ -2
PRKDCP78527 AC007656.2-201ENST00000624902 4547 ntBASIC2.55□□□□□ -2
PRKDCP78527 AC067945.1-201ENST00000342609 618 ntBASIC2.55□□□□□ -2
PRKDCP78527 AC062016.1-201ENST00000355719 319 ntBASIC2.55□□□□□ -2
PRKDCP78527 OR13C3-201ENST00000374781 1108 ntBASIC2.55□□□□□ -2
PRKDCP78527 OFD1P11Y-201ENST00000418213 1177 ntBASIC2.55□□□□□ -2
PRKDCP78527 OR1AA1P-201ENST00000419597 916 ntBASIC2.55□□□□□ -2
PRKDCP78527 AL603825.1-201ENST00000438481 80 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms