Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NPM1P24-201ENST00000428039 894 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 RPL21P91-201ENST00000429231 479 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 HMGB3P9-201ENST00000441799 583 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 MTCYBP42-201ENST00000444653 1130 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 OR1H1P-201ENST00000448731 937 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC108463.1-201ENST00000450258 347 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC090142.1-201ENST00000465776 462 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC092324.1-201ENST00000468671 324 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 RPL23AP65-201ENST00000475608 468 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 RNU2-30P-201ENST00000516209 141 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 snoZ278.1-201ENST00000517059 112 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 CDH12P4-201ENST00000517835 295 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 CDH12P3-201ENST00000517935 295 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 CDH12P1-201ENST00000518435 295 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC124293.1-201ENST00000530034 493 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AP001880.2-201ENST00000538233 448 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC008033.2-201ENST00000542626 177 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 RPL21P7-201ENST00000557463 483 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC105129.1-201ENST00000560250 297 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 MTATP6P24-201ENST00000576835 677 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 SLC25A36P1-201ENST00000590111 465 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AL583856.2-201ENST00000606298 543 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 MIR6748-201ENST00000610433 71 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AL356863.1-201ENST00000623378 1080 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC006963.1-201ENST00000624003 1052 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AP001002.2-201ENST00000625137 386 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 MTND4P26-201ENST00000415971 1359 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC016588.2-201ENST00000632484 3021 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 AP000756.2-201ENST00000624168 2567 ntBASIC3.97□□□□□ -1.77
NKX3-1Q99801 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
NKX3-1Q99801 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
NKX3-1Q99801 AC138393.1-206ENST00000540997 1886 ntBASIC3.96□□□□□ -1.77
NKX3-1Q99801 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.77
NKX3-1Q99801 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
NKX3-1Q99801 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.96□□□□□ -1.77
NKX3-1Q99801 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC119744.1-201ENST00000454746 1715 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 ANKRD36P1-201ENST00000344424 659 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 OR1L1-202ENST00000373686 1083 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 SNORD116-12-201ENST00000384468 92 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
NKX3-1Q99801 MTCO1P56-201ENST00000401674 224 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 MTATP6P20-201ENST00000414147 562 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 GAPDHP49-201ENST00000421421 961 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC004448.2-201ENST00000422360 586 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AL158073.1-201ENST00000426848 1104 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 RPS26P47-201ENST00000427219 348 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 MOB1AP1-201ENST00000430903 535 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 MTND1P33-201ENST00000446251 917 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 RPS27AP15-201ENST00000447672 466 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 OR52J1P-201ENST00000450596 932 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 EIF4A1P11-201ENST00000451239 222 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 NPM1P13-201ENST00000452663 865 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC079203.1-201ENST00000487972 404 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC105233.1-201ENST00000498840 781 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
NKX3-1Q99801 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC113430.1-201ENST00000506872 718 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC002456.2-201ENST00000509356 380 ntBASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.96□□□□□ -1.78
NKX3-1Q99801 AC010285.3-201ENST00000511668 676 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms