Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 MTND4P14-201ENST00000435799 1354 ntBASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 TMC3-AS1-206ENST00000612811 2726 ntBASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.07□□□□□ -1.28
LIMD1Q9UGP4 AC092821.2-201ENST00000545710 2042 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 Y_RNA.22-201ENST00000362492 102 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 PPIAP26-201ENST00000377951 522 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 RNU6-1106P-201ENST00000390845 107 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 RNA5SP474-201ENST00000391234 90 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AL360271.1-201ENST00000395679 510 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 MIR548F5-201ENST00000408421 86 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 MRPS21P5-201ENST00000417885 231 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 COX6CP15-201ENST00000426313 211 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC108479.1-201ENST00000431142 427 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AP000936.3-201ENST00000438127 255 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC087879.1-201ENST00000474343 374 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC066616.1-201ENST00000486795 413 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC027801.3-201ENST00000515049 698 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC009902.1-201ENST00000519351 183 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 APOOP3-201ENST00000536787 586 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AL117187.1-201ENST00000555482 181 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 SMIM12P1-201ENST00000603004 274 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC114477.1-201ENST00000605097 605 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AL589743.6-201ENST00000611025 117 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC133104.2-201ENST00000615272 193 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC119674.1-207ENST00000641355 633 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 NCOA4P3-201ENST00000513203 1877 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AL592148.3-201ENST00000608771 2646 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 AC130650.2-201ENST00000618736 2403 ntBASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIMD1Q9UGP4 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 Y_RNA.31-201ENST00000362574 102 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 Y_RNA.112-201ENST00000363250 102 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 RNU6-39P-201ENST00000384344 107 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 AC008171.1-201ENST00000395058 200 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 RPA3-204ENST00000406109 434 ntTSL 3 BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 RN7SKP158-201ENST00000410453 326 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 RNU4-14P-201ENST00000410858 122 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 RNU6-370P-201ENST00000411008 104 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 AC099782.1-201ENST00000425889 474 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 AL121916.1-201ENST00000429405 308 ntBASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC7.05□□□□□ -1.28
LIMD1Q9UGP4 AL137792.2-201ENST00000443484 235 ntBASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms