Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SNORA62.2-201ENST00000364672 152 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 ATP5F1P2-201ENST00000398143 760 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN4P29074 RNU4-25P-201ENST00000410569 230 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 RNA5SP306-201ENST00000411087 107 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN4P29074 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN4P29074 AC023141.6-201ENST00000429418 337 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN4P29074 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN4P29074 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN4P29074 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN4P29074 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AC103987.1-201ENST00000473394 348 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN4P29074 RPL36AP41-201ENST00000493820 306 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 MTND4LP2-201ENST00000502312 285 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN4P29074 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.39□□□□□ -1.71
PTPN4P29074 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN4P29074 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN4P29074 RN7SKP141-201ENST00000516167 338 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AC087272.1-201ENST00000523624 533 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 PHBP17-201ENST00000528576 541 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN4P29074 AC105129.1-201ENST00000560250 297 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.39□□□□□ -1.71
PTPN4P29074 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.39□□□□□ -1.71
PTPN4P29074 AC040174.2-201ENST00000602701 465 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AC008782.1-201ENST00000603386 430 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AL590392.1-201ENST00000604960 446 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AC007390.2-201ENST00000606229 3803 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AL133243.1-201ENST00000614487 366 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 MLECP1-201ENST00000615893 709 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.39□□□□□ -1.71
PTPN4P29074 AC024023.1-201ENST00000624530 922 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 MIR6715B-201ENST00000637172 77 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 OR2L1P-202ENST00000641567 1023 ntBASIC4.39□□□□□ -1.71
PTPN4P29074 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN4P29074 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN4P29074 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN4P29074 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.39□□□□□ -1.71
PTPN4P29074 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN4P29074 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN4P29074 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.38□□□□□ -1.71
PTPN4P29074 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN4P29074 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN4P29074 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
PTPN4P29074 ZNF90P1-201ENST00000480493 1951 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC012020.1-201ENST00000624541 1728 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN4P29074 FAM3C2-201ENST00000312214 681 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PTPN4P29074 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN4P29074 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN4P29074 RSL24D1P6-201ENST00000426934 401 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN4P29074 AL500527.1-201ENST00000448532 255 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 DDX39BP2-208ENST00000453923 258 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC089999.1-201ENST00000460336 374 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC104763.1-201ENST00000475274 360 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC023050.1-201ENST00000498198 304 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC083829.1-201ENST00000503756 657 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN4P29074 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN4P29074 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PTPN4P29074 AC010285.3-201ENST00000511668 676 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN4P29074 NOP56P3-201ENST00000549457 385 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.38□□□□□ -1.71
PTPN4P29074 RPL23AP97-201ENST00000568955 471 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN4P29074 CBX3P2-202ENST00000583365 535 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 SUMO2P14-201ENST00000604488 293 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 OR6R2P-201ENST00000609216 300 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN4P29074 AC025016.1-201ENST00000616746 682 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 AC000123.2-201ENST00000623124 461 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN4P29074 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN4P29074 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN4P29074 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN4P29074 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN4P29074 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN4P29074 MTND4P21-201ENST00000453886 1357 ntBASIC4.38□□□□□ -1.71
PTPN4P29074 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN4P29074 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN4P29074 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN4P29074 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN4P29074 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN4P29074 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN4P29074 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN4P29074 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN4P29074 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
PTPN4P29074 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms