Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 AC092376.2-201ENST00000622621 4116 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AL669831.5-218ENST00000591702 1873 ntBASIC1.68□□□□□ -2.14
USH2AO75445 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 RNU6-729P-201ENST00000384399 107 ntBASIC1.68□□□□□ -2.14
USH2AO75445 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC1.68□□□□□ -2.14
USH2AO75445 BX890604.2-201ENST00000427883 474 ntBASIC1.68□□□□□ -2.14
USH2AO75445 NPM1P18-201ENST00000434232 732 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 AC099063.2-201ENST00000446360 662 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AC025181.1-201ENST00000477507 416 ntBASIC1.68□□□□□ -2.14
USH2AO75445 STMN1P2-201ENST00000508435 439 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC1.68□□□□□ -2.14
USH2AO75445 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 BNIP3P8-201ENST00000597863 560 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 MIR8057-201ENST00000620957 69 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AL360270.2-201ENST00000562952 5985 ntBASIC1.68□□□□□ -2.14
USH2AO75445 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 SNORA44-201ENST00000384584 132 ntBASIC1.68□□□□□ -2.14
USH2AO75445 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC1.68□□□□□ -2.14
USH2AO75445 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC1.68□□□□□ -2.14
USH2AO75445 RPL36AP13-201ENST00000457490 317 ntBASIC1.68□□□□□ -2.14
USH2AO75445 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC1.68□□□□□ -2.14
USH2AO75445 AP000648.2-201ENST00000624182 404 ntBASIC1.68□□□□□ -2.14
USH2AO75445 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 RNA5SP453-201ENST00000362503 119 ntBASIC1.68□□□□□ -2.14
USH2AO75445 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 SNORA70.6-201ENST00000383934 134 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC1.68□□□□□ -2.14
USH2AO75445 VN1R25P-201ENST00000443385 738 ntBASIC1.68□□□□□ -2.14
USH2AO75445 RPL23AP12-201ENST00000467573 473 ntBASIC1.68□□□□□ -2.14
USH2AO75445 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC1.68□□□□□ -2.14
USH2AO75445 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.68□□□□□ -2.14
USH2AO75445 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 RPL23AP92-201ENST00000603609 255 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AC025754.2-201ENST00000606491 432 ntBASIC1.68□□□□□ -2.14
USH2AO75445 AC046143.2-201ENST00000609789 160 ntBASIC1.68□□□□□ -2.14
USH2AO75445 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC1.68□□□□□ -2.14
USH2AO75445 AL137790.1-201ENST00000634283 177 ntBASIC1.68□□□□□ -2.14
USH2AO75445 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USH2AO75445 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
USH2AO75445 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC1.68□□□□□ -2.14
USH2AO75445 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
USH2AO75445 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC1.67□□□□□ -2.14
USH2AO75445 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC1.67□□□□□ -2.14
USH2AO75445 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
USH2AO75445 snoU13.26-201ENST00000459452 105 ntBASIC1.67□□□□□ -2.14
USH2AO75445 DPPA3P2-201ENST00000553589 478 ntBASIC1.67□□□□□ -2.14
USH2AO75445 AC025627.2-201ENST00000576220 160 ntBASIC1.67□□□□□ -2.14
USH2AO75445 AL096803.3-201ENST00000609032 532 ntBASIC1.67□□□□□ -2.14
USH2AO75445 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
USH2AO75445 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
USH2AO75445 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
USH2AO75445 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 COL12A1-207ENST00000483888 9637 ntAPPRIS ALT1 TSL 5 BASIC1.67□□□□□ -2.14
USH2AO75445 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC1.67□□□□□ -2.14
USH2AO75445 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
USH2AO75445 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC1.67□□□□□ -2.14
USH2AO75445 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC1.67□□□□□ -2.14
USH2AO75445 Y_RNA.118-201ENST00000363300 101 ntBASIC1.67□□□□□ -2.14
USH2AO75445 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC1.67□□□□□ -2.14
USH2AO75445 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC1.67□□□□□ -2.14
USH2AO75445 RPL36AP21-201ENST00000490372 323 ntBASIC1.67□□□□□ -2.14
USH2AO75445 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC1.67□□□□□ -2.14
USH2AO75445 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC1.67□□□□□ -2.14
USH2AO75445 HNRNPDLP4-201ENST00000605144 301 ntBASIC1.67□□□□□ -2.14
USH2AO75445 AC073657.2-201ENST00000605661 303 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms