Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC3.99□□□□□ -1.77
SDC1P18827 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
SDC1P18827 RNU6-792P-201ENST00000363490 107 ntBASIC3.99□□□□□ -1.77
SDC1P18827 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.99□□□□□ -1.77
SDC1P18827 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 GCNT6-201ENST00000379591 934 ntBASIC3.99□□□□□ -1.77
SDC1P18827 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SDC1P18827 SNORA37-201ENST00000384504 129 ntBASIC3.99□□□□□ -1.77
SDC1P18827 HMGB1P10-201ENST00000395823 563 ntBASIC3.99□□□□□ -1.77
SDC1P18827 NCSTNP1-201ENST00000406229 144 ntBASIC3.99□□□□□ -1.77
SDC1P18827 EIF4A1P3-201ENST00000411521 244 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AC105402.1-201ENST00000413336 545 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AC073136.2-201ENST00000417282 849 ntBASIC3.99□□□□□ -1.77
SDC1P18827 MTCO3P4-201ENST00000419236 787 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AL590609.2-201ENST00000421430 368 ntBASIC3.99□□□□□ -1.77
SDC1P18827 RPL12P28-201ENST00000430852 489 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AL035458.1-201ENST00000433096 585 ntBASIC3.99□□□□□ -1.77
SDC1P18827 LYPLA1P1-201ENST00000434514 622 ntBASIC3.99□□□□□ -1.77
SDC1P18827 ELOCP10-201ENST00000440624 327 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC3.99□□□□□ -1.77
SDC1P18827 CLIC4P1-201ENST00000453177 535 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AL354710.1-201ENST00000453641 246 ntBASIC3.99□□□□□ -1.77
SDC1P18827 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.99□□□□□ -1.77
SDC1P18827 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.99□□□□□ -1.77
SDC1P18827 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.99□□□□□ -1.77
SDC1P18827 UBA52P3-201ENST00000491303 382 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AC231760.1-201ENST00000498002 260 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AC008628.1-201ENST00000508663 265 ntBASIC3.99□□□□□ -1.77
SDC1P18827 RNA5SP49-201ENST00000516450 115 ntBASIC3.99□□□□□ -1.77
SDC1P18827 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.99□□□□□ -1.77
SDC1P18827 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC3.99□□□□□ -1.77
SDC1P18827 AP003049.1-201ENST00000529418 457 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC3.99□□□□□ -1.77
SDC1P18827 AC079148.1-201ENST00000565944 819 ntBASIC3.99□□□□□ -1.77
SDC1P18827 MIR4715-201ENST00000584117 79 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AF230666.2-201ENST00000602328 725 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.99□□□□□ -1.77
SDC1P18827 ELOCP34-201ENST00000604436 327 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AC010200.2-201ENST00000605098 235 ntBASIC3.99□□□□□ -1.77
SDC1P18827 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.99□□□□□ -1.77
SDC1P18827 AP001033.2-201ENST00000609701 1003 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AC055764.2-201ENST00000610089 670 ntBASIC3.99□□□□□ -1.77
SDC1P18827 FAM27D1-201ENST00000612308 341 ntBASIC3.99□□□□□ -1.77
SDC1P18827 AC010435.1-201ENST00000623353 1177 ntBASIC3.99□□□□□ -1.77
SDC1P18827 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.99□□□□□ -1.77
SDC1P18827 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 MAPK10-253ENST00000641010 4072 ntBASIC3.99□□□□□ -1.77
SDC1P18827 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
SDC1P18827 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC1P18827 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SDC1P18827 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AC090971.4-201ENST00000560291 1800 ntBASIC3.98□□□□□ -1.77
SDC1P18827 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC1P18827 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC1P18827 RNU6-304P-201ENST00000364855 107 ntBASIC3.98□□□□□ -1.77
SDC1P18827 RNU6-650P-201ENST00000365658 111 ntBASIC3.98□□□□□ -1.77
SDC1P18827 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 RNU4-31P-201ENST00000384211 141 ntBASIC3.98□□□□□ -1.77
SDC1P18827 MIR708-201ENST00000390708 88 ntBASIC3.98□□□□□ -1.77
SDC1P18827 CYB5AP4-201ENST00000396692 399 ntBASIC3.98□□□□□ -1.77
SDC1P18827 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC1P18827 PTGES3P2-201ENST00000407942 482 ntBASIC3.98□□□□□ -1.77
SDC1P18827 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC1P18827 RNA5SP306-201ENST00000411087 107 ntBASIC3.98□□□□□ -1.77
SDC1P18827 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 RPL6P29-201ENST00000414863 865 ntBASIC3.98□□□□□ -1.77
SDC1P18827 P2RY10P2-201ENST00000416730 913 ntBASIC3.98□□□□□ -1.77
SDC1P18827 LINC01347-201ENST00000417964 355 ntBASIC3.98□□□□□ -1.77
SDC1P18827 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AL121882.1-201ENST00000422893 417 ntBASIC3.98□□□□□ -1.77
SDC1P18827 MTND2P11-201ENST00000423638 648 ntBASIC3.98□□□□□ -1.77
SDC1P18827 IPMKP1-201ENST00000425988 855 ntBASIC3.98□□□□□ -1.77
SDC1P18827 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC1P18827 RPS3AP54-201ENST00000435535 734 ntBASIC3.98□□□□□ -1.77
SDC1P18827 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 AL138878.2-201ENST00000440581 1241 ntBASIC3.98□□□□□ -1.77
SDC1P18827 RNFT1P2-201ENST00000443064 757 ntBASIC3.98□□□□□ -1.77
SDC1P18827 AC069540.1-201ENST00000446320 988 ntBASIC3.98□□□□□ -1.77
SDC1P18827 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 RPL23AP24-201ENST00000458203 385 ntBASIC3.98□□□□□ -1.77
SDC1P18827 RNU6-1218P-201ENST00000458990 108 ntBASIC3.98□□□□□ -1.77
SDC1P18827 RPL35P6-201ENST00000490024 372 ntBASIC3.98□□□□□ -1.77
SDC1P18827 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.98□□□□□ -1.77
SDC1P18827 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 RN7SKP141-201ENST00000516167 338 ntBASIC3.98□□□□□ -1.77
SDC1P18827 IGKV2D-10-201ENST00000520194 281 ntBASIC3.98□□□□□ -1.77
SDC1P18827 VTA1P2-201ENST00000520205 911 ntBASIC3.98□□□□□ -1.77
SDC1P18827 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms