Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HPS3Q969F9 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HPS3Q969F9 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.54□□□□□ -1.52
HPS3Q969F9 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
HPS3Q969F9 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HPS3Q969F9 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HPS3Q969F9 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.54□□□□□ -1.52
HPS3Q969F9 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HPS3Q969F9 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.54□□□□□ -1.52
HPS3Q969F9 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HPS3Q969F9 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
HPS3Q969F9 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
HPS3Q969F9 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 AC109780.1-201ENST00000451768 1344 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.53□□□□□ -1.52
HPS3Q969F9 Y_RNA.192-201ENST00000363977 102 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
HPS3Q969F9 SNORD65.1-201ENST00000390889 71 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 CASP3-203ENST00000393588 677 ntTSL 4 BASIC5.53□□□□□ -1.52
HPS3Q969F9 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AL450992.3-201ENST00000413192 568 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 RPL6P29-201ENST00000414863 865 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 MTND2P18-201ENST00000419962 1030 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC104333.2-201ENST00000422630 192 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 BLOC1S2P1-201ENST00000428431 301 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AC092013.1-201ENST00000438795 332 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AC004980.3-201ENST00000447046 365 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 MTCO2P25-201ENST00000447065 681 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 NDUFA5P9-201ENST00000472609 340 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 RPS27P23-201ENST00000487608 251 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 RN7SL808P-201ENST00000496066 299 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AC008885.2-201ENST00000509506 930 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC048346.1-201ENST00000510247 144 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC004980.4-201ENST00000513375 203 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC110775.1-201ENST00000513721 462 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.53□□□□□ -1.52
HPS3Q969F9 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.53□□□□□ -1.52
HPS3Q969F9 MTND2P26-201ENST00000528255 1029 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.53□□□□□ -1.52
HPS3Q969F9 DPRXP4-201ENST00000578053 568 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC124856.1-201ENST00000600819 896 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AL353778.1-201ENST00000603149 408 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AL445222.1-201ENST00000607259 628 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC090246.1-201ENST00000616499 426 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC121761.2-201ENST00000617300 689 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 BX005214.3-202ENST00000619809 325 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
HPS3Q969F9 AP000648.2-201ENST00000624182 404 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 AC009039.2-201ENST00000624524 529 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
HPS3Q969F9 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
HPS3Q969F9 AL353743.4-201ENST00000422653 1547 ntBASIC5.53□□□□□ -1.52
HPS3Q969F9 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.53□□□□□ -1.52
HPS3Q969F9 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.52□□□□□ -1.53
HPS3Q969F9 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.52□□□□□ -1.53
HPS3Q969F9 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HPS3Q969F9 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.52□□□□□ -1.53
HPS3Q969F9 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HPS3Q969F9 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HPS3Q969F9 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HPS3Q969F9 AC012321.1-201ENST00000561622 1588 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HPS3Q969F9 RNA5SP428-201ENST00000365129 132 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 SNORD116-2-201ENST00000384274 95 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 SNORD116-6-201ENST00000384711 96 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 SNORA66-201ENST00000384792 133 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC5.52□□□□□ -1.53
HPS3Q969F9 GJA6P-201ENST00000415117 1042 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 AF186996.5-201ENST00000418098 904 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 PAICSP7-201ENST00000419829 962 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.52□□□□□ -1.53
HPS3Q969F9 RPL7P53-201ENST00000421245 739 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 NPM1P24-201ENST00000428039 894 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.52□□□□□ -1.53
HPS3Q969F9 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.52□□□□□ -1.53
HPS3Q969F9 RPL23AP76-201ENST00000441860 458 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.52□□□□□ -1.53
HPS3Q969F9 CYCSP24-201ENST00000445119 316 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 RPS27AP15-201ENST00000447672 466 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 BTF3P6-201ENST00000448054 499 ntBASIC5.52□□□□□ -1.53
HPS3Q969F9 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms