Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 PHBP17-201ENST00000528576 541 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AP003072.1-201ENST00000531740 145 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC055876.1-202ENST00000567053 138 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 KC877982.1-201ENST00000602313 470 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 SMIM12P1-201ENST00000603004 274 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC011468.4-201ENST00000603942 409 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC141002.1-201ENST00000607025 279 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 uc_338.31-201ENST00000615595 186 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 MIR6721-201ENST00000617181 87 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC090527.3-201ENST00000619041 548 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC138649.5-201ENST00000637456 137 ntBASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 ERG-202ENST00000398897 4651 ntTSL 5 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.85□□□□□ -1.47
UBE3DQ7Z6J8 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 MRE11P1-201ENST00000464884 2127 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 TMCC1P1-201ENST00000518897 1980 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 PPBPP2-201ENST00000513150 1362 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 CASC19-221ENST00000641309 1382 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 SAMMSON-210ENST00000641260 1308 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 SNORD81.2-201ENST00000365153 76 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 RNA5SP251-201ENST00000410614 137 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 RN7SKP144-201ENST00000411108 279 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AL357752.1-201ENST00000412817 349 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 NCOR1P3-201ENST00000420479 303 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 RPSAP65-201ENST00000429660 595 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC108479.1-201ENST00000431142 427 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 RSU1P2-202ENST00000437884 485 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 NIPA2P5-201ENST00000452282 464 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 HMGN3P1-201ENST00000453847 193 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AL117692.1-201ENST00000494283 713 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC093278.1-201ENST00000494700 600 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 RNU6-1045P-201ENST00000516321 107 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 HSPE1P2-201ENST00000554777 306 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 SULT1C2P1-202ENST00000562418 459 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 GLYATL1P2-202ENST00000588046 902 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 LLPHP1-201ENST00000603571 367 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 MIR6889-201ENST00000613185 59 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 RN7SL261P-201ENST00000613441 282 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC015712.7-201ENST00000615211 635 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC073488.6-201ENST00000632293 754 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 AC022325.1-201ENST00000502748 2199 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 CASC19-204ENST00000641001 2055 ntBASIC5.84□□□□□ -1.47
UBE3DQ7Z6J8 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.84□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 174.5 ms