Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.91□□□□□ -1.78
COL6A3P12111 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 OTUD4P1-201ENST00000237841 3067 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL6A3P12111 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 AP002001.2-201ENST00000529025 1469 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.91□□□□□ -1.78
COL6A3P12111 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.91□□□□□ -1.78
COL6A3P12111 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
COL6A3P12111 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.91□□□□□ -1.78
COL6A3P12111 ATP5F1P6-201ENST00000402768 767 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 AL513477.1-202ENST00000417061 214 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 AC073508.1-201ENST00000428866 656 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 SETP5-201ENST00000437270 562 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 RPL7P48-201ENST00000461513 746 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 AC133134.1-201ENST00000466800 359 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 AC093663.1-201ENST00000497190 394 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL6A3P12111 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL6A3P12111 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL6A3P12111 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.9□□□□□ -1.78
COL6A3P12111 RPL29P14-201ENST00000495837 428 ntBASIC3.9□□□□□ -1.78
COL6A3P12111 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL6A3P12111 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.9□□□□□ -1.78
COL6A3P12111 AC010591.1-201ENST00000603941 649 ntBASIC3.9□□□□□ -1.78
COL6A3P12111 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC3.9□□□□□ -1.78
COL6A3P12111 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL6A3P12111 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL6A3P12111 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL6A3P12111 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL6A3P12111 RPF2P1-201ENST00000424137 906 ntBASIC3.9□□□□□ -1.79
COL6A3P12111 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A3P12111 Z93242.1-201ENST00000427102 353 ntBASIC3.9□□□□□ -1.79
COL6A3P12111 RPL7P36-201ENST00000444633 681 ntBASIC3.9□□□□□ -1.79
COL6A3P12111 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
COL6A3P12111 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL6A3P12111 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL6A3P12111 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.9□□□□□ -1.79
COL6A3P12111 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.9□□□□□ -1.79
COL6A3P12111 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL6A3P12111 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
COL6A3P12111 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC3.9□□□□□ -1.79
COL6A3P12111 MIR1911-201ENST00000410783 80 ntBASIC3.9□□□□□ -1.79
COL6A3P12111 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A3P12111 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A3P12111 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.9□□□□□ -1.79
COL6A3P12111 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A3P12111 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.9□□□□□ -1.79
COL6A3P12111 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A3P12111 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A3P12111 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.9□□□□□ -1.79
COL6A3P12111 AC006116.10-201ENST00000591836 581 ntBASIC3.9□□□□□ -1.79
COL6A3P12111 AC079684.1-201ENST00000621405 437 ntBASIC3.9□□□□□ -1.79
COL6A3P12111 AL137790.1-201ENST00000634283 177 ntBASIC3.9□□□□□ -1.79
COL6A3P12111 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A3P12111 AC239868.2-201ENST00000564237 4527 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A3P12111 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A3P12111 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A3P12111 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC3.89□□□□□ -1.79
COL6A3P12111 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC3.89□□□□□ -1.79
COL6A3P12111 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A3P12111 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.89□□□□□ -1.79
COL6A3P12111 AC073522.1-201ENST00000483312 377 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.89□□□□□ -1.79
COL6A3P12111 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC3.89□□□□□ -1.79
COL6A3P12111 RNU7-143P-201ENST00000516781 65 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.89□□□□□ -1.79
COL6A3P12111 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 AC084759.1-201ENST00000561168 290 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC3.89□□□□□ -1.79
COL6A3P12111 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A3P12111 FRG1EP-201ENST00000634469 770 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A3P12111 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A3P12111 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
COL6A3P12111 U3.19-201ENST00000390893 196 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.89□□□□□ -1.79
COL6A3P12111 HSPE1P27-201ENST00000430808 296 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 RNA5SP164-201ENST00000516533 110 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A3P12111 AC130352.1-201ENST00000602979 661 ntBASIC3.89□□□□□ -1.79
COL6A3P12111 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A3P12111 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC3.89□□□□□ -1.79
COL6A3P12111 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A3P12111 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A3P12111 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL6A3P12111 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC3.88□□□□□ -1.79
COL6A3P12111 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A3P12111 OR5J1P-201ENST00000313544 939 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL6A3P12111 AL035407.1-201ENST00000429211 571 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 AC005189.1-201ENST00000431286 310 ntBASIC3.88□□□□□ -1.79
COL6A3P12111 AC108734.1-201ENST00000439549 399 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms