Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
SHOX2O60902 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.13□□□□□ -1.75
SHOX2O60902 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
SHOX2O60902 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
SHOX2O60902 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SHOX2O60902 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.13□□□□□ -1.75
SHOX2O60902 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 ERCC6-202ENST00000374127 1782 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
SHOX2O60902 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.12□□□□□ -1.75
SHOX2O60902 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SHOX2O60902 RN7SKP149-201ENST00000363008 344 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.12□□□□□ -1.75
SHOX2O60902 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.12□□□□□ -1.75
SHOX2O60902 BX510359.2-201ENST00000417920 305 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.12□□□□□ -1.75
SHOX2O60902 AL159169.1-201ENST00000421119 127 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 MTND4LP13-201ENST00000425022 298 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 AC016712.1-201ENST00000431088 378 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.12□□□□□ -1.75
SHOX2O60902 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.12□□□□□ -1.75
SHOX2O60902 AL035551.1-201ENST00000446931 348 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.12□□□□□ -1.75
SHOX2O60902 RPL36AP13-201ENST00000457490 317 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 AC083982.1-201ENST00000485679 344 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
SHOX2O60902 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.12□□□□□ -1.75
SHOX2O60902 AC093824.1-201ENST00000508796 343 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 OR7H2P-201ENST00000513483 306 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 C1GALT1P3-201ENST00000522049 819 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 OR4A2P-201ENST00000527276 913 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.12□□□□□ -1.75
SHOX2O60902 SNORA35B-201ENST00000607417 129 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.12□□□□□ -1.75
SHOX2O60902 uc_338.32-201ENST00000615087 172 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 AC140479.6-201ENST00000633535 357 ntBASIC4.12□□□□□ -1.75
SHOX2O60902 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.12□□□□□ -1.75
SHOX2O60902 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
SHOX2O60902 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
SHOX2O60902 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
SHOX2O60902 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 RNU6-697P-201ENST00000363348 107 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 RNU1-130P-201ENST00000363930 160 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.11□□□□□ -1.75
SHOX2O60902 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 AL136131.1-201ENST00000406079 803 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC4.11□□□□□ -1.75
SHOX2O60902 AL359265.2-201ENST00000434367 631 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.11□□□□□ -1.75
SHOX2O60902 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.11□□□□□ -1.75
SHOX2O60902 HMGB3P8-201ENST00000449709 577 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 RPL23AP81-201ENST00000455252 467 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 DHFRP3-201ENST00000455595 559 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 AC068305.1-201ENST00000497406 726 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 AC020593.1-201ENST00000507399 299 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
SHOX2O60902 HMGB1P23-201ENST00000518743 568 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.11□□□□□ -1.75
SHOX2O60902 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.11□□□□□ -1.75
SHOX2O60902 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.11□□□□□ -1.75
SHOX2O60902 AP000827.1-201ENST00000527814 258 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.11□□□□□ -1.75
SHOX2O60902 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
SHOX2O60902 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.11□□□□□ -1.75
SHOX2O60902 AC090312.1-201ENST00000580637 348 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 FAM106CP-201ENST00000582212 507 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.11□□□□□ -1.75
SHOX2O60902 AC005084.1-201ENST00000605160 304 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 MIR92B-201ENST00000607575 96 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 RNVU1-4-201ENST00000612985 164 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.11□□□□□ -1.75
SHOX2O60902 AC091953.3-201ENST00000623220 236 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 AC009950.2-201ENST00000636548 183 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.11□□□□□ -1.75
SHOX2O60902 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.11□□□□□ -1.75
SHOX2O60902 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.11□□□□□ -1.75
SHOX2O60902 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 AL133412.1-201ENST00000380194 2992 ntBASIC4.11□□□□□ -1.75
SHOX2O60902 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SHOX2O60902 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.11□□□□□ -1.75
SHOX2O60902 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.1□□□□□ -1.75
SHOX2O60902 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.1□□□□□ -1.75
SHOX2O60902 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms