RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 MYT1Q01538 1121 aa7.03□□□□□ -1.28
SYNE2-202ENST00000344113 PELP1Q8IZL8 1130 aaKnown RBP6.85□□□□□ -1.31
SYNE2-202ENST00000344113 TTBK1Q5TCY1 1321 aaPredicted RBP6.82□□□□□ -1.32
SYNE2-202ENST00000344113 ERICH6Q7L0X2 663 aa6.21□□□□□ -1.42
SYNE2-202ENST00000344113 YTHDC1Q96MU7 727 aaKnown RBP6.1□□□□□ -1.43
SYNE2-202ENST00000344113 CCER1Q8TC90 406 aaPredicted RBP5.99□□□□□ -1.45
SYNE2-202ENST00000344113 SLC24A1O60721 1099 aa5.89□□□□□ -1.47
SYNE2-202ENST00000344113 ZEB1P37275 1124 aaPredicted RBP5.89□□□□□ -1.47
SYNE2-202ENST00000344113 RANGAP1P46060 587 aaPredicted RBP5.87□□□□□ -1.47
SYNE2-202ENST00000344113 MYT1LQ9UL68 1186 aa5.86□□□□□ -1.47
SYNE2-202ENST00000344113 CLSPNQ9HAW4 1339 aa5.84□□□□□ -1.47
SYNE2-202ENST00000344113 CENPBP07199 599 aaPredicted RBP5.81□□□□□ -1.48
SYNE2-202ENST00000344113 EHMT2Q96KQ7 1210 aa5.81□□□□□ -1.48
SYNE2-202ENST00000344113 DAXXQ9UER7 740 aaPredicted RBP5.8□□□□□ -1.48
SYNE2-202ENST00000344113 APLP2Q06481 763 aa5.71□□□□□ -1.5
SYNE2-202ENST00000344113 HRCP23327 699 aa5.69□□□□□ -1.5
SYNE2-202ENST00000344113 GLIPR1L2Q4G1C9 344 aa5.68□□□□□ -1.5
SYNE2-202ENST00000344113 DCAF8L2P0C7V8 631 aa5.58□□□□□ -1.52
SYNE2-202ENST00000344113 PPARGC1BQ86YN6 1023 aaKnown RBP5.56□□□□□ -1.52
SYNE2-202ENST00000344113 ERICH6BQ5W0A0 696 aa5.53□□□□□ -1.52
SYNE2-202ENST00000344113 NEFLP07196 543 aa5.52□□□□□ -1.53
SYNE2-202ENST00000344113 ARXQ96QS3 562 aa5.5□□□□□ -1.53
SYNE2-202ENST00000344113 PCGF6Q9BYE7 350 aa5.49□□□□□ -1.53
SYNE2-202ENST00000344113 RTL5Q5HYW3 569 aaPredicted RBP5.48□□□□□ -1.53
SYNE2-202ENST00000344113 BCL11AQ9H165 835 aa5.47□□□□□ -1.53
SYNE2-202ENST00000344113 POLR3GLQ9BT43 218 aa5.47□□□□□ -1.53
SYNE2-202ENST00000344113 NCLP19338 710 aaKnown RBP5.45□□□□□ -1.54
SYNE2-202ENST00000344113 SHROOM4Q9ULL8 1493 aa5.45□□□□□ -1.54
SYNE2-202ENST00000344113 EIF5BO60841 1220 aaKnown RBP5.44□□□□□ -1.54
SYNE2-202ENST00000344113 PRKCSHP14314 528 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-202ENST00000344113 SCAF1Q9H7N4 1312 aaKnown RBP5.41□□□□□ -1.54
SYNE2-202ENST00000344113 ZNF326Q5BKZ1 582 aaKnown RBP5.41□□□□□ -1.54
SYNE2-202ENST00000344113 HMGB1P09429 215 aaKnown RBP5.39□□□□□ -1.55
SYNE2-202ENST00000344113 CDK11AQ9UQ88 783 aaPredicted RBP5.39□□□□□ -1.55
SYNE2-202ENST00000344113 ARID4BQ4LE39 1312 aaPredicted RBP5.39□□□□□ -1.55
SYNE2-202ENST00000344113 NCBP3Q53F19 620 aaKnown RBP5.38□□□□□ -1.55
SYNE2-202ENST00000344113 ACIN1Q9UKV3 1341 aaKnown RBP5.38□□□□□ -1.55
SYNE2-202ENST00000344113 TNNT2P45379 298 aaPredicted RBP5.38□□□□□ -1.55
SYNE2-202ENST00000344113 FAM9AQ8IZU1 332 aaPredicted RBP5.37□□□□□ -1.55
SYNE2-202ENST00000344113 ANP32EQ9BTT0 268 aa5.36□□□□□ -1.55
SYNE2-202ENST00000344113 TRIM26Q12899 539 aaPredicted RBP5.36□□□□□ -1.55
SYNE2-202ENST00000344113 PTMSP20962 102 aa5.35□□□□□ -1.55
SYNE2-202ENST00000344113 GTF3C3Q9Y5Q9 886 aa5.35□□□□□ -1.55
SYNE2-202ENST00000344113 ZNF316A6NFI3 1004 aaPredicted RBP5.32□□□□□ -1.56
SYNE2-202ENST00000344113 ARID3AQ99856 593 aa5.32□□□□□ -1.56
SYNE2-202ENST00000344113 AMER1Q5JTC6 1135 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-202ENST00000344113 TRIM44Q96DX7 344 aaPredicted RBP5.28□□□□□ -1.56
SYNE2-202ENST00000344113 ANP32AP39687 249 aaKnown RBP5.28□□□□□ -1.56
SYNE2-202ENST00000344113 DCAF1Q9Y4B6 1507 aa5.28□□□□□ -1.56
SYNE2-202ENST00000344113 ANP32BQ92688 251 aaKnown RBP5.27□□□□□ -1.57
SYNE2-202ENST00000344113 UBE2Q2Q8WVN8 375 aa5.27□□□□□ -1.57
SYNE2-202ENST00000344113 HOMEZQ8IX15 550 aa5.26□□□□□ -1.57
SYNE2-202ENST00000344113 USP35Q9P2H5 1018 aa5.22□□□□□ -1.57
SYNE2-202ENST00000344113 ANO8Q9HCE9 1232 aaPredicted RBP5.21□□□□□ -1.58
SYNE2-202ENST00000344113 FBXO3Q9UK99 471 aa5.21□□□□□ -1.58
SYNE2-202ENST00000344113 CCDC136Q96JN2 1154 aa5.21□□□□□ -1.58
SYNE2-202ENST00000344113 NEUROD1Q13562 356 aa5.19□□□□□ -1.58
SYNE2-202ENST00000344113 PLEKHG5O94827 1062 aa5.19□□□□□ -1.58
SYNE2-202ENST00000344113 RSPH6AQ9H0K4 717 aa5.18□□□□□ -1.58
SYNE2-202ENST00000344113 CSRNP3Q8WYN3 585 aa5.18□□□□□ -1.58
SYNE2-202ENST00000344113 CDK11BP21127 795 aaKnown RBP5.17□□□□□ -1.58
SYNE2-202ENST00000344113 CALRP27797 417 aaKnown RBP5.17□□□□□ -1.58
SYNE2-202ENST00000344113 LAS1LQ9Y4W2 734 aaKnown RBP5.16□□□□□ -1.58
SYNE2-202ENST00000344113 DIEXFQ68CQ4 756 aaKnown RBP5.14□□□□□ -1.59
SYNE2-202ENST00000344113 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.13□□□□□ -1.59
SYNE2-202ENST00000344113 NISCHQ9Y2I1 1504 aa5.13□□□□□ -1.59
SYNE2-202ENST00000344113 FANCIQ9NVI1 1328 aa5.12□□□□□ -1.59
SYNE2-202ENST00000344113 CNGB1Q14028 1251 aaPredicted RBP5.11□□□□□ -1.59
SYNE2-202ENST00000344113 ATP1B4Q9UN42 357 aaPredicted RBP5.11□□□□□ -1.59
SYNE2-202ENST00000344113 RTN4Q9NQC3 1192 aaKnown RBP5.11□□□□□ -1.59
SYNE2-202ENST00000344113 MTERF4Q7Z6M4 381 aaKnown RBP5.1□□□□□ -1.59
SYNE2-202ENST00000344113 MAP7D2Q96T17 732 aa5.09□□□□□ -1.59
SYNE2-202ENST00000344113 BCANQ96GW7 911 aa5.08□□□□□ -1.6
SYNE2-202ENST00000344113 PODXL2Q9NZ53 605 aa5.08□□□□□ -1.6
SYNE2-202ENST00000344113 TAF7LQ5H9L4 462 aa5.08□□□□□ -1.6
SYNE2-202ENST00000344113 BCCIPQ9P287 314 aaKnown RBP eCLIP5.07□□□□□ -1.6
SYNE2-202ENST00000344113 HSP90B1P14625 803 aaKnown RBP5.07□□□□□ -1.6
SYNE2-202ENST00000344113 TAF3Q5VWG9 929 aa5.07□□□□□ -1.6
SYNE2-202ENST00000344113 NEFMP07197 916 aa5.06□□□□□ -1.6
SYNE2-202ENST00000344113 NBR1Q14596 966 aa5.06□□□□□ -1.6
SYNE2-202ENST00000344113 A0A0U1RQG5 324 aaPredicted RBP5.05□□□□□ -1.6
SYNE2-202ENST00000344113 RRP9O43818 475 aaKnown RBP5.05□□□□□ -1.6
SYNE2-202ENST00000344113 PKNOX2Q96KN3 472 aa5.05□□□□□ -1.6
SYNE2-202ENST00000344113 HMGB1P1B2RPK0 211 aaPredicted RBP5.04□□□□□ -1.6
SYNE2-202ENST00000344113 SUPT5HO00267 1087 aaKnown RBP5.04□□□□□ -1.6
SYNE2-202ENST00000344113 NOP58Q9Y2X3 529 aaKnown RBP5.03□□□□□ -1.6
SYNE2-202ENST00000344113 CCDC180Q9P1Z9 1646 aa5.03□□□□□ -1.6
SYNE2-202ENST00000344113 C11orf95C9JLR9 678 aaPredicted RBP5.03□□□□□ -1.6
SYNE2-202ENST00000344113 PPM1GO15355 546 aaPredicted RBP5.03□□□□□ -1.61
SYNE2-202ENST00000344113 SALL2Q9Y467 1007 aaPredicted RBP5.02□□□□□ -1.61
SYNE2-202ENST00000344113 DDRGK1Q96HY6 314 aa5.02□□□□□ -1.61
SYNE2-202ENST00000344113 ISY1Q9ULR0 285 aaKnown RBP5.02□□□□□ -1.61
SYNE2-202ENST00000344113 DEKP35659 375 aaKnown RBP5.01□□□□□ -1.61
SYNE2-202ENST00000344113 GOLGA6L3A6NEY3 463 aa5□□□□□ -1.61
SYNE2-202ENST00000344113 PNNQ9H307 717 aaKnown RBP5□□□□□ -1.61
SYNE2-202ENST00000344113 BRD2P25440 801 aaKnown RBP5□□□□□ -1.61
SYNE2-202ENST00000344113 LOC105371045A0A1W2PR82 267 aa4.99□□□□□ -1.61
SYNE2-202ENST00000344113 VGFO15240 615 aaPredicted RBP4.99□□□□□ -1.61
SYNE2-202ENST00000344113 TNNT3P45378 269 aaPredicted RBP4.98□□□□□ -1.61
SYNE2-202ENST00000344113 GOLGA6L6A8MZA4 724 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms